myRT

myRT report for GCA_011390515.1_ASM1139051v1

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Seq: JAABSJ010000236.1 Oscillatoria sp. isolate S11.Bin022 Scaffold_234, whole genome shotgun sequence (9094 bp)
Overview 1 RT 1: 5144-8896 bp Neighborhood of RT #1 [5144, 8907] RVT_N RVT-GII GIIM HNHc PyrE Feature: gene Location: 5144-5278 bp Feature: gene Location: 5315-5569 bp Feature: gene Location: 5796-7529 bp Feature: domain Description: RVT_N Location: 5826-6072 bp Feature: domain Description: RVT_N Location: 5826-6072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6114-6804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 4-6804 bp Feature: domain Description: GIIM Note: maturase Location: 6906-7113 bp Feature: domain Description: GIIM Note: maturase Location: 6906-71 1 3 bp Feature: domain Description: HNHc Note: nucleases Location: 7335-7476 bp Feature: domain Description: HNHc Note: nucleases Location: 7335-7476 bp Feature: gene Location: 7788-8192 bp Feature: gene Location: 8287-8907 bp Feature: domain Description: PyrE Location: 8359-8896 bp Feature: domain Description: PyrE Location: 8359-8896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PyrE (COG0461)

Seq: JAABSJ010000360.1 Oscillatoria sp. isolate S11.Bin022 Scaffold_358, whole genome shotgun sequence (2932 bp)
Overview 1 RT 1: 1-1960 bp Neighborhood of RT #1 [1, 2556] RVT-UG25 Feature: gene Location: 1-2556 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 1561-1960 bp Feature: RT Description: RVT-UG2 5 Note: UG2 5 RT Location: 1561-1960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG25

Seq: JAABSJ010000004.1 Oscillatoria sp. isolate S11.Bin022 Scaffold_4, whole genome shotgun sequence (72007 bp)
Overview 1 RT 1: 18302-23644 bp Neighborhood of RT #1 [18302, 23644] RVT_N RVT-GII GIIM HNH COG1543 Feature: gene Location: 18302-18958 bp Feature: gene Location: 19386-19568 bp Feature: gene Location: 19895-21634 bp Feature: domain Description: RVT_N Location: 19937-20183 bp Feature: domain Description: RVT_N Location: 1993 7-20183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20225-20894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20225-20894 bp Feature: domain Description: GIIM Note: maturase Location: 20996-21203 bp Feature: domain Description: GIIM Note: maturase Location: 20996-21203 bp Feature: domain Description: HNH Note: nucleases Location: 21467-21602 bp Feature: domain Description: HNH Note: nucleases Location: 21467-21602 bp Feature: gene Location: 21788-23377 bp Feature: domain Description: COG1543 Location: 21797-23372 bp Feature: domain Description: COG1543 Location: 21797-23 3 72 bp Feature: gene Location: 23393-23644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG1543 (Predicted glycosyl hydrolase, contains GH57 and DUF1957 domains )

Seq: JAABSJ010000051.1 Oscillatoria sp. isolate S11.Bin022 Scaffold_50, whole genome shotgun sequence (30470 bp)
Overview 1 RT 1: 3944-9689 bp Neighborhood of RT #1 [3944, 9689] PhaF RVT-UG25 DUF1848 Feature: gene Location: 3944-4399 bp Feature: domain Description: PhaF Location: 4061-4385 bp Feature: domain Description: PhaF Location: 4 061-4 385 bp Feature: gene Location: 4433-4858 bp Feature: gene Location: 4924-8043 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 6382-6781 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 6382-6781 bp Feature: gene Location: 8289-9275 bp Feature: domain Description: DUF1848 Location: 8298-9099 bp Feature: domain Description: DUF184 8 Location: 8298-9099 bp Feature: gene Location: 9384-9689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhaF (COG3937), RVT-UG25, DUF1848 (pfam08902)

Seq: JAABSJ010000080.1 Oscillatoria sp. isolate S11.Bin022 Scaffold_78, whole genome shotgun sequence (22258 bp)
Overview 1 RT 1: 3-5658 bp Neighborhood of RT #1 [3, 5765] 2OG-FeII_Oxy_3 RVT_N RVT-GII GIIM McrA YjbI Pentapeptide Pentapeptide YjbI Pentapeptide NUC1 Feature: gene Location: 3-518 bp Feature: domain Description: 2OG-FeII_Oxy_3 Location: 135-393 bp Feature: domain Description: 2OG-FeII_Oxy_3 Location: 135 -393 bp Feature: gene Location: 1338-3098 bp Feature: domain Description: RVT_N Location: 1383-1629 bp Feature: domain Description: RVT_N Location: 1383-1629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1671-2355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1671-235 5 bp Feature: domain Description: GIIM Note: maturase Location: 2466-2682 bp Feature: domain Description: GIIM Note: maturase Location: 2466-2682 bp Feature: domain Description: McrA Location: 2796-3054 bp Feature: domain Description: McrA Location: 2796-305 4 bp Feature: gene Location: 3298-4620 bp Feature: domain Description: YjbI Location: 3331-3727 bp Feature: domain Description: YjbI Location: 3331-3727 bp Feature: domain Description: Pentapeptide Location: 3748-3856 bp Feature: domain Description: Pentapeptide Location: 3748-385 6 bp Feature: domain Description: Pentapeptide Location: 3871-3961 bp Feature: domain Description: Pentapeptide Location: 3871-3961 bp Feature: domain Description: YjbI Location: 4006-4363 bp Feature: domain Description: YjbI Location: 4006-4363 bp Feature: domain Description: Pentapeptide Location: 4390-4495 bp Feature: domain Description: Pentapeptide Location: 4390-4495 bp Feature: gene Location: 4704-5765 bp Feature: domain Description: NUC1 Location: 4917-5658 bp Feature: domain Description: NUC1 Location: 4917-5 65 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2OG-FeII_Oxy_3 (pfam13640), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), YjbI (COG2346), Pentapeptide (pfam00805), NUC1 (COG1864)

Seq: JAABSJ010000090.1 Oscillatoria sp. isolate S11.Bin022 Scaffold_88, whole genome shotgun sequence (20939 bp)
Overview 1 RT 1: 11072-17185 bp Neighborhood of RT #1 [11072, 17187] RpfG GAF_2 RVT_N RVT-GII GIIM HNHc RVT_N GIIM Uma2 Feature: gene Location: 11072-12160 bp Feature: domain Description: RpfG Location: 11264-11693 bp Feature: domain Description: RpfG Location: 1126 4-116 93 bp Feature: domain Description: GAF_2 Location: 11795-12137 bp Feature: domain Description: GAF_2 Location: 11795-12137 bp Feature: gene Location: 12587-12718 bp Feature: gene Location: 13060-14811 bp Feature: domain Description: RVT_N Location: 13093-13339 bp Feature: domain Description: RVT_N Location: 13093-13339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13381-14047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13381-14047 bp Feature: domain Description: GIIM Note: maturase Location: 14149-14386 bp Feature: domain Description: GIIM Note: maturase Location: 14149-14386 bp Feature: domain Description: HNHc Note: nucleases Location: 14572-14728 bp Feature: domain Description: HNHc Note: nucleases Location: 14572-14728 bp Feature: gene Location: 15562-16170 bp Feature: domain Description: RVT_N Location: 15604-15826 bp Feature: domain Description: RVT_N Location: 156 04-15826 bp Feature: domain Description: GIIM Note: maturase Location: 15910-16126 bp Feature: domain Description: GIIM Note: maturase Location: 15910-16 126 bp Feature: gene Location: 16615-17187 bp Feature: domain Description: Uma2 Location: 16633-17185 bp Feature: domain Description: Uma2 Location: 16 6 33-17185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpfG (COG3437), GAF_2 (pfam13185), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Uma2 (pfam05685)