myRT

myRT report for GCA_011391085.1_ASM1139108v1

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Seq: JAABRD010000014.1 Thiotrichaceae bacterium isolate S06.Bin195 NODE_14_length_101707_cov_5.92151, whole genome shotgun sequence (101707 bp)
Overview 1 RT 1: 12324-14064 bp Neighborhood of RT #1 [12324, 14141] UPF0175 COG2405 RVT-DGRs VapB_antitoxin Feature: gene Location: 12324-12569 bp Feature: domain Description: UPF0175 Location: 12339-12546 bp Feature: domain Description: UPF01 75 Location: 1 2339-1 2546 bp Feature: gene Location: 12566-13051 bp Feature: domain Description: COG2405 Location: 12575-13049 bp Feature: domain Description: COG2405 Location: 1 2575-1 3049 bp Feature: gene Location: 13125-13571 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13335-13530 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 3335-1 3530 bp Feature: gene Location: 13629-13778 bp Feature: gene Location: 13923-14141 bp Feature: domain Description: VapB_antitoxin Location: 13926-14064 bp Feature: domain Description: VapB_antitoxin Location: 1 3926-1 4064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0175 (pfam03683), COG2405 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-DGRs, VapB_antitoxin (pfam09957)

Seq: JAABRD010000017.1 Thiotrichaceae bacterium isolate S06.Bin195 NODE_17_length_96348_cov_6.11066, whole genome shotgun sequence (96348 bp)
Overview 1 RT 1: 3374-7246 bp Neighborhood of RT #1 [3374, 7251] DUF2459 RVT-GII HNHc RVT_N RVT-GII VagC Feature: gene Location: 3374-4027 bp Feature: domain Description: DUF2459 Location: 3482-3944 bp Feature: domain Description: DUF2 459 Location: 3482 -3944 bp Feature: gene Location: 4177-4323 bp Feature: gene Location: 4425-5357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4437-4791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4437-4791 bp Feature: domain Description: HNHc Note: nucleases Location: 5157-5331 bp Feature: domain Description: HNHc Note: nucleases Location: 5157-5331 bp Feature: gene Location: 5509-6024 bp Feature: domain Description: RVT_N Location: 5581-5788 bp Feature: domain Description: RVT_N Location: 5581-5788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5872-5986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5872 -5986 bp Feature: gene Location: 6779-6934 bp Feature: gene Location: 7021-7251 bp Feature: domain Description: VagC Location: 7039-7246 bp Feature: domain Description: VagC Location: 7039-72 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2459 (pfam09601), RVT-GII, HNHc (smart00507), RVT_N (pfam13655), VagC (COG4456)

Seq: JAABRD010000019.1 Thiotrichaceae bacterium isolate S06.Bin195 NODE_19_length_94893_cov_6.1774, whole genome shotgun sequence (94893 bp)
Overview 1 RT 1: 17244-26668 bp Neighborhood of RT #1 [17244, 26668] COG3379 COG3379 TPR TPR TPR_19 Sulfotransfer_1 RVT-UG4 RVT-UG4 AAA-ATPase_like PDDEXK_9 Feature: gene Location: 17244-19970 bp Feature: domain Description: COG3379 Location: 17268-18120 bp Feature: domain Description: COG3 3 79 Location: 17268-18120 bp Feature: domain Description: COG3379 Location: 18168-18327 bp Feature: domain Description: COG3 3 79 Location: 18168-183 27 bp Feature: domain Description: TPR Location: 18531-18687 bp Feature: domain Description: TPR Location: 1853 1-18687 bp Feature: domain Description: TPR Location: 18825-19083 bp Feature: domain Description: TPR Location: 18825-19083 bp Feature: domain Description: TPR_19 Location: 19113-19182 bp Feature: domain Description: TPR_19 Location: 19113 -19182 bp Feature: domain Description: Sulfotransfer_1 Location: 19425-19944 bp Feature: domain Description: Sulfotransfer_1 Location: 19425-19944 bp Feature: gene Location: 20030-20242 bp Feature: gene Location: 20356-24018 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 20737-20989 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2073 7-20989 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 21085-21262 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 21085-21262 bp Feature: gene Location: 24260-26092 bp Feature: domain Description: AAA-ATPase_like Location: 24272-25175 bp Feature: domain Description: AAA-ATPase_like Location: 24272-25175 bp Feature: domain Description: PDDEXK_9 Location: 25679-26033 bp Feature: domain Description: PDDEXK_9 Location: 25679-2603 3 bp Feature: gene Location: 26396-26668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3379 (Predicted phosphohydrolase or phosphomutase, AlkP superfamily ), TPR (smart00028), TPR_19 (pfam14559), Sulfotransfer_1 (pfam00685), RVT-UG4, AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)

Seq: JAABRD010000032.1 Thiotrichaceae bacterium isolate S06.Bin195 NODE_32_length_64054_cov_6.09013, whole genome shotgun sequence (64054 bp)
Overview 1 RT 1: 1600-5642 bp Neighborhood of RT #1 [1600, 5647] Avd_like RVT-DGRs PRK00748 PRK02083 Feature: gene Location: 1600-1791 bp Feature: gene Location: 1801-2163 bp Feature: domain Description: Avd_like Location: 1831-2137 bp Feature: domain Description: Avd_like Location: 1831-2137 bp Feature: gene Location: 2169-3338 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2490-3129 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24 90-3129 bp Feature: gene Location: 4083-4832 bp Feature: domain Description: PRK00748 Location: 4086-4791 bp Feature: domain Description: PRK0074 8 Location: 4 086-4 791 bp Feature: gene Location: 4874-5647 bp Feature: domain Description: PRK02083 Location: 4883-5642 bp Feature: domain Description: PRK02083 Location: 4 883-564 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, PRK00748 (1-(5-phosphoribosyl)-5- imidazole-4-carboxamide isomerase; Validated), PRK02083 (imidazole glycerol phosphate synthase subunit HisF; Provisional)