myRT

myRT report for GCA_011391605.1_ASM1139160v1

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Seq: JAABQF010000016.1 Betaproteobacteria bacterium isolate S04.Bin010 Scaffold_16, whole genome shotgun sequence (7120 bp)
Overview 1 RT 1: 362-4285 bp Neighborhood of RT #1 [362, 4701] INT_P4_C RVT-GII RVT-GII Spo0J Feature: gene Location: 362-1468 bp Feature: domain Description: INT_P4_C Location: 872-1445 bp Feature: domain Description: INT_P4_C Location: 872-1 445 bp Feature: gene Location: 1571-1774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1619-1751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 9-1 751 bp Feature: gene Location: 1782-2093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1812-2025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 2-2025 bp Feature: gene Location: 2388-3704 bp Feature: gene Location: 3703-4701 bp Feature: domain Description: Spo0J Location: 3766-4285 bp Feature: domain Description: Spo0J Location: 3766-4285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-GII, Spo0J (COG1475)

Seq: JAABQF010000163.1 Betaproteobacteria bacterium isolate S04.Bin010 Scaffold_163, whole genome shotgun sequence (3771 bp)
Overview 1 RT 1: 1-2538 bp Neighborhood of RT #1 [1, 2618] RVT-GII COG4584 COG4584 IstB_IS21 Feature: gene Location: 1-306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-307 bp Feature: gene Location: 338-1876 bp Feature: domain Description: COG4584 Location: 437-1220 bp Feature: domain Description: COG4584 Location: 437-12 2 0 bp Feature: domain Description: COG4584 Location: 1298-1694 bp Feature: domain Description: COG4584 Location: 12 98-1694 bp Feature: gene Location: 1866-2618 bp Feature: domain Description: IstB_IS21 Location: 2022-2538 bp Feature: domain Description: IstB_IS2 1 Location: 2 02 2 -2 538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4584 (Transposase ), IstB_IS21 (pfam01695)

Seq: JAABQF010000242.1 Betaproteobacteria bacterium isolate S04.Bin010 Scaffold_242, whole genome shotgun sequence (3464 bp)
Overview 1 RT 1: 3-3444 bp Neighborhood of RT #1 [3, 3461] DUF2726 RVT-GII GIIM PRK11768 Feature: gene Location: 3-128 bp Feature: gene Location: 226-1068 bp Feature: domain Description: DUF2726 Location: 412-739 bp Feature: domain Description: DUF2726 Location: 412-73 9 bp Feature: gene Location: 1098-3053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-263 7 bp Feature: domain Description: GIIM Note: maturase Location: 2727-2958 bp Feature: domain Description: GIIM Note: maturase Location: 2727-2958 bp Feature: gene Location: 3171-3461 bp Feature: domain Description: PRK11768 Location: 3198-3444 bp Feature: domain Description: PRK11768 Location: 3 198-3 444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2726 (pfam10881), RVT-GII, GIIM (pfam08388), PRK11768 (serine/threonine protein kinase)

Seq: JAABQF010000698.1 Betaproteobacteria bacterium isolate S04.Bin010 Scaffold_701, whole genome shotgun sequence (2642 bp)
Overview 1 RT 1: 2-1851 bp Neighborhood of RT #1 [2, 2639] RVT-GII ANTAR RHH_1 Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 2-289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155-287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155-287 bp Feature: gene Location: 241-570 bp Feature: domain Description: ANTAR Location: 316-400 bp Feature: domain Description: ANTAR Location: 316-4 00 bp Feature: domain Description: RHH_1 Location: 442-553 bp Feature: domain Description: RHH_1 Location: 4 4 2-553 bp Feature: gene Location: 711-2639 bp Feature: domain Description: Resolvase Location: 729-1170 bp Feature: domain Description: Resolvase Location: 729-1170 bp Feature: domain Description: Recombinase Location: 1257-1623 bp Feature: domain Description: Recombinase Location: 1257-1623 bp Feature: domain Description: Zn_ribbon_recom Location: 1668-1851 bp Feature: domain Description: Zn_ribbon_recom Location: 1668-1851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ANTAR (smart01012), RHH_1 (pfam01402), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)