myRT

myRT report for GCA_011392765.1_ASM1139276v1

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Seq: WYCW01000001.1 Candidatus Thiosymbion ectosymbiont of Catanema sp. Cochon2018 isolate Cochon2018-1 scaffold1, whole genome shotgun sequence (2035761 bp)
Overview 1 RT 1: 1415087-1419370 bp 2 RT 2: 1449813-1451534 bp 3 RT 3: 1656206-1661086 bp Neighborhood of RT #1 [1415087, 1419405] RVT-GII HicB Neighborhood of RT #2 [1449813, 1451534] RVT-DGRs Neighborhood of RT #3 [1656206, 1661094] Elp3 COG3547 RVT-GII VapB_antitoxin PRK11409 Feature: gene Location: 1415087-1415380 bp Feature: gene Location: 1415380-1415745 bp Feature: gene Location: 1416316-1417590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1416574-1417243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 6574-1 41 7243 bp Feature: gene Location: 1418278-1418955 bp Feature: gene Location: 1419178-1419405 bp Feature: domain Description: HicB Location: 1419193-1419370 bp Feature: domain Description: HicB Location: 1 41 91 93-1 41 9370 bp Feature: gene Location: 1449813-1450307 bp Feature: gene Location: 1450359-1450547 bp Feature: gene Location: 1450655-1451059 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1450658-1450871 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 450658-1 450871 bp Feature: gene Location: 1451153-1451332 bp Feature: gene Location: 1451331-1451534 bp Feature: gene Location: 1656206-1657978 bp Feature: domain Description: Elp3 Location: 1656833-1657397 bp Feature: domain Description: Elp3 Location: 1 656833-1 657397 bp Feature: gene Location: 1658192-1659184 bp Feature: domain Description: COG3547 Location: 1658201-1659101 bp Feature: domain Description: COG3547 Location: 1 658201 -1 6591 01 bp Feature: gene Location: 1659830-1660102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1660001-1660073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 660001 -1 660073 bp Feature: gene Location: 1660338-1660532 bp Feature: domain Description: VapB_antitoxin Location: 1660341-1660479 bp Feature: domain Description: VapB_antitoxin Location: 1 660341 -1 660479 bp Feature: gene Location: 1660840-1661094 bp Feature: domain Description: PRK11409 Location: 1660843-1661086 bp Feature: domain Description: PRK1 1 409 Location: 1 660843-1 661 086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HicB (pfam05534), RVT-DGRs, Elp3 (smart00729), COG3547 (Transposase ), VapB_antitoxin (pfam09957), PRK11409 (YoeB-YefM toxin-antitoxin system antitoxin YefM)

Seq: WYCW01000002.1 Candidatus Thiosymbion ectosymbiont of Catanema sp. Cochon2018 isolate Cochon2018-1 scaffold2, whole genome shotgun sequence (679448 bp)
Overview 1 RT 1: 553151-557603 bp Neighborhood of RT #1 [553151, 557611] COG3415 HEPN_Toprim_N RVT-GII RVT-GII GIIM YoeB_toxin Feature: gene Location: 553151-553735 bp Feature: domain Description: COG3415 Location: 553223-553607 bp Feature: domain Description: COG3415 Location: 5532 2 3-553607 bp Feature: gene Location: 554125-555405 bp Feature: domain Description: HEPN_Toprim_N Location: 554128-554809 bp Feature: domain Description: HEPN_Toprim_N Location: 55412 8-554809 bp Feature: gene Location: 555563-556801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555845-556082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555845-556082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556085-556451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556085-556451 bp Feature: domain Description: GIIM Note: maturase Location: 556523-556727 bp Feature: domain Description: GIIM Note: maturase Location: 55652 3-55672 7 bp Feature: gene Location: 557053-557238 bp Feature: gene Location: 557417-557611 bp Feature: domain Description: YoeB_toxin Location: 557420-557603 bp Feature: domain Description: YoeB_toxin Location: 55742 0-557603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), HEPN_Toprim_N (pfam18871), RVT-GII, GIIM (pfam08388), YoeB_toxin (pfam06769)

Seq: WYCW01000003.1 Candidatus Thiosymbion ectosymbiont of Catanema sp. Cochon2018 isolate Cochon2018-1 scaffold3size674497, whole genome shotgun sequence (675654 bp)
Overview 1 RT 1: 392210-394909 bp 2 RT 2: 643255-646245 bp Neighborhood of RT #1 [392210, 395028] YgiN RVT-GII DUF5615 Neighborhood of RT #2 [643255, 646245] p53_inducible_oxidoreductase GIIM RVT-GII Feature: gene Location: 392210-392350 bp Feature: gene Location: 392607-392975 bp Feature: domain Description: YgiN Location: 392622-392838 bp Feature: domain Description: YgiN Location: 3 92622-3 9283 8 bp Feature: gene Location: 393113-393772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393116-393389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 93 116-3 93 3 89 bp Feature: gene Location: 393695-394375 bp Feature: gene Location: 394687-395028 bp Feature: domain Description: DUF5615 Location: 394693-394909 bp Feature: domain Description: DUF5615 Location: 3 94693 -3 94909 bp Feature: gene Location: 643255-644238 bp Feature: domain Description: p53_inducible_oxidoreductase Location: 643258-644227 bp Feature: domain Description: p53 _inducible_oxidoreductase Location: 643 258-644227 bp Feature: gene Location: 644540-644674 bp Feature: domain Description: GIIM Note: maturase Location: 644549-644654 bp Feature: domain Description: GIIM Note: maturase Location: 644549-644654 bp Feature: gene Location: 644959-645468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644977-645415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644977-645415 bp Feature: gene Location: 645590-645766 bp Feature: gene Location: 645889-646245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgiN (COG1359), RVT-GII, DUF5615 (pfam18480), p53_inducible_oxidoreductase (cd05276), GIIM (pfam08388)

Seq: WYCW01000004.1 Candidatus Thiosymbion ectosymbiont of Catanema sp. Cochon2018 isolate Cochon2018-1 scaffold4, whole genome shotgun sequence (948204 bp)
Overview 1 RT 1: 37203-42587 bp 2 RT 2: 848607-852401 bp Neighborhood of RT #1 [37203, 42592] COG3547 RVT-GII MlaC MurA Neighborhood of RT #2 [848607, 852401] Mrr Mrr_cat N6_N4_Mtase RVT-Retrons BrnT_toxin Feature: gene Location: 37203-38330 bp Feature: domain Description: COG3547 Location: 37419-38187 bp Feature: domain Description: COG354 7 Location: 374 19-38187 bp Feature: gene Location: 38541-38735 bp Feature: gene Location: 39004-39981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39013-39343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39013-3934 3 bp Feature: gene Location: 40551-41180 bp Feature: domain Description: MlaC Location: 40662-41151 bp Feature: domain Description: MlaC Location: 4 0662-4 1151 bp Feature: gene Location: 41333-42592 bp Feature: domain Description: MurA Location: 41336-42587 bp Feature: domain Description: MurA Location: 4 1336-4 2587 bp Feature: gene Location: 848607-849434 bp Feature: domain Description: Mrr Location: 848649-848913 bp Feature: domain Description: Mrr Location: 84 864 9-84 8913 bp Feature: domain Description: Mrr_cat Location: 849009-849351 bp Feature: domain Description: Mrr_cat Location: 84 9009-84 9351 bp Feature: gene Location: 849692-850027 bp Feature: domain Description: N6_N4_Mtase Location: 849797-849980 bp Feature: domain Description: N6_N4 _Mtase Location: 84 9797-84 9980 bp Feature: gene Location: 850907-851887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 851057-851630 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 851057-851630 bp Feature: gene Location: 851896-852204 bp Feature: domain Description: BrnT_toxin Location: 851929-852178 bp Feature: domain Description: BrnT_toxin Location: 851929-852178 bp Feature: gene Location: 852201-852401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, MlaC (pfam05494), MurA (COG0766), Mrr (COG1715), Mrr_cat (pfam04471), N6_N4_Mtase (pfam01555), RVT-Retrons, BrnT_toxin (pfam04365)

Seq: WYCW01000005.1 Candidatus Thiosymbion ectosymbiont of Catanema sp. Cochon2018 isolate Cochon2018-1 scaffold5, whole genome shotgun sequence (308453 bp)
Overview 1 RT 1: 251251-255247 bp Neighborhood of RT #1 [251251, 255247] Methyltransf_23 PIN_Pae0151-like PIN_Pae0151-like RVT-GII GIIM Feature: gene Location: 251251-251505 bp Feature: domain Description: Methyltransf_23 Location: 251335-251482 bp Feature: domain Description: Methyltransf_23 Location: 25 1335 -25 1482 bp Feature: gene Location: 251932-252198 bp Feature: domain Description: PIN_Pae0151-like Location: 251944-252076 bp Feature: domain Description: PIN_Pae015 1-like Location: 25 1944-25 2076 bp Feature: domain Description: PIN_Pae0151-like Location: 252079-252181 bp Feature: domain Description: PIN_Pae015 1-like Location: 25 2079-25 2181 bp Feature: gene Location: 252443-254218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252731-253391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 2731-25 3391 bp Feature: domain Description: GIIM Note: maturase Location: 253463-253619 bp Feature: domain Description: GIIM Note: maturase Location: 25 3463-25 3619 bp Feature: gene Location: 254593-254793 bp Feature: gene Location: 255017-255247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_23 (pfam13489), PIN_Pae0151-like (cd09873), RVT-GII, GIIM (pfam08388)