myRT

myRT report for GCA_011440305.1_ASM1144030v1

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Seq: JAAOIW010000011.1 Paenibacillus sp. S3N08 contig11, whole genome shotgun sequence (260316 bp)
Overview 1 RT 1: 143977-156133 bp Neighborhood of RT #1 [143977, 156147] SF2_C_SNF RVT-GII RVT-GII Intron_maturas2 HNHc spore_pdaA Feature: gene Location: 143977-144450 bp Feature: gene Location: 144509-146161 bp Feature: domain Description: SF2_C_SNF Location: 145202-145571 bp Feature: domain Description: SF2_C_SNF Location: 1 45202-1 45571 bp Feature: gene Location: 146262-148184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146556-147258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46556-1 47258 bp Feature: gene Location: 148538-148702 bp Feature: gene Location: 148911-150518 bp Feature: gene Location: 150708-151685 bp Feature: gene Location: 151733-153697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152120-152960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 521 20-1 52960 bp Feature: domain Description: Intron_maturas2 Location: 153089-153365 bp Feature: domain Description: Intron_maturas2 Location: 1 53089-1 53365 bp Feature: domain Description: HNHc Note: nucleases Location: 153494-153671 bp Feature: domain Description: HNHc Note: nucleases Location: 1 53494-1 53671 bp Feature: gene Location: 154407-154817 bp Feature: gene Location: 155356-156147 bp Feature: domain Description: spore_pdaA Location: 155464-156133 bp Feature: domain Description: spore_pdaA Location: 1 55464-1 561 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SF2_C_SNF (cd18793), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), spore_pdaA (TIGR02884)

Seq: JAAOIW010000019.1 Paenibacillus sp. S3N08 contig19, whole genome shotgun sequence (126331 bp)
Overview 1 RT 1: 204-5288 bp Neighborhood of RT #1 [204, 5288] RVT-GII RVT-GII RVT-GII pfam00656 Feature: gene Location: 204-587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 495-585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 495-585 bp Feature: gene Location: 680-1309 bp Feature: gene Location: 1230-1865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1485-1863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1485-1863 bp Feature: gene Location: 1878-2054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1881-2034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1881-2 034 bp Feature: gene Location: 2176-3066 bp Feature: domain Description: pfam00656 Location: 2188-2842 bp Feature: domain Description: pfam00656 Location: 2 188-2 842 bp Feature: gene Location: 3081-5288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, pfam00656 (Peptidase_C14;Caspase domain)

Seq: JAAOIW010000022.1 Paenibacillus sp. S3N08 contig22, whole genome shotgun sequence (103585 bp)
Overview 1 RT 1: 71946-75301 bp Neighborhood of RT #1 [71946, 75306] YcjR GntR RVT-GII YjhB His_Phos_1 Feature: gene Location: 71946-72956 bp Feature: domain Description: YcjR Location: 72054-72720 bp Feature: domain Description: YcjR Location: 72054-72720 bp Feature: gene Location: 73224-73889 bp Feature: domain Description: GntR Location: 73254-73875 bp Feature: domain Description: GntR Location: 73 254-73 875 bp Feature: gene Location: 74233-74511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74263-74407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74263 -74407 bp Feature: gene Location: 74675-75013 bp Feature: domain Description: YjhB Location: 74702-74921 bp Feature: domain Description: YjhB Location: 74702-74921 bp Feature: gene Location: 75028-75306 bp Feature: domain Description: His_Phos_1 Location: 75037-75301 bp Feature: domain Description: His_Phos_1 Location: 7503 7-753 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcjR (COG1082), GntR (pfam00392), RVT-GII, YjhB (COG1051), His_Phos_1 (pfam00300)

Seq: JAAOIW010000024.1 Paenibacillus sp. S3N08 contig24, whole genome shotgun sequence (95782 bp)
Overview 1 RT 1: 72038-75140 bp Neighborhood of RT #1 [72038, 75208] GGDEF RVT-GII AAA_13 AAA_13 Feature: gene Location: 72038-72688 bp Feature: domain Description: GGDEF Location: 72224-72674 bp Feature: domain Description: GGDEF Location: 72224 -72674 bp Feature: gene Location: 72866-73099 bp Feature: gene Location: 73172-73441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73178-73436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73178-734 36 bp Feature: gene Location: 73582-74478 bp Feature: domain Description: AAA_13 Location: 73630-74416 bp Feature: domain Description: AAA_13 Location: 73630-74 4 16 bp Feature: gene Location: 74651-75208 bp Feature: domain Description: AAA_13 Location: 74657-75140 bp Feature: domain Description: AAA_13 Location: 74 657-7514 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GGDEF (TIGR00254), RVT-GII, AAA_13 (pfam13166)

Seq: JAAOIW010000034.1 Paenibacillus sp. S3N08 contig34, whole genome shotgun sequence (23076 bp)
Overview 1 RT 1: 10920-19266 bp Neighborhood of RT #1 [10920, 19439] RVT-GII xerC xerC xerC RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C COG3666 DDE_Tnp_1_6 Feature: gene Location: 10920-11318 bp Feature: gene Location: 11584-11844 bp Feature: gene Location: 12141-12695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12432-12666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12432-12666 bp Feature: gene Location: 12758-13720 bp Feature: domain Description: xerC Location: 12770-13640 bp Feature: domain Description: xerC Location: 12770-13640 bp Feature: gene Location: 13710-15542 bp Feature: domain Description: xerC Location: 13731-14508 bp Feature: domain Description: xerC Location: 13731-145 08 bp Feature: domain Description: xerC Location: 14640-15486 bp Feature: domain Description: xerC Location: 14640-15 486 bp Feature: gene Location: 15619-16068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15724-16042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 724-16042 bp Feature: gene Location: 16104-17699 bp Feature: domain Description: LZ_Tnp_IS66 Location: 16236-16446 bp Feature: domain Description: LZ_Tnp_IS66 Location: 16236-16446 bp Feature: domain Description: zf-IS66 Location: 16473-16602 bp Feature: domain Description: zf-IS66 Location: 16473-16602 bp Feature: domain Description: DDE_Tnp_IS66 Location: 16668-17523 bp Feature: domain Description: DDE_Tnp_IS66 Location: 16668-175 23 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 17541-17664 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 175 41-17664 bp Feature: gene Location: 17751-19439 bp Feature: domain Description: COG3666 Location: 17754-18225 bp Feature: domain Description: COG3666 Location: 1775 4-18225 bp Feature: domain Description: DDE_Tnp_1_6 Location: 18897-19266 bp Feature: domain Description: DDE_Tnp_1_6 Location: 18897-19266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, xerC (PRK01287), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: JAAOIW010000038.1 Paenibacillus sp. S3N08 contig38, whole genome shotgun sequence (16617 bp)
Overview 1 RT 1: 6212-10752 bp Neighborhood of RT #1 [6212, 10752] NAT_SF RVT-GII HNHc Feature: gene Location: 6212-7042 bp Feature: domain Description: NAT_SF Location: 6770-6950 bp Feature: domain Description: NAT_SF Location: 6 770-6 950 bp Feature: gene Location: 7116-7310 bp Feature: gene Location: 7893-9653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8151-8850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8151-8850 bp Feature: domain Description: HNHc Note: nucleases Location: 9405-9522 bp Feature: domain Description: HNHc Note: nucleases Location: 9405-9522 bp Feature: gene Location: 9906-10109 bp Feature: gene Location: 10606-10752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NAT_SF (cl17182), RVT-GII, HNHc (smart00507)

Seq: JAAOIW010000039.1 Paenibacillus sp. S3N08 contig39, whole genome shotgun sequence (15891 bp)
Overview 1 RT 1: 2046-8376 bp Neighborhood of RT #1 [2046, 8376] HicB RVT_N RVT-GII GIIM HNHc RVT-GII GIIM Feature: gene Location: 2046-2288 bp Feature: domain Description: HicB Location: 2064-2238 bp Feature: domain Description: HicB Location: 2064-2238 bp Feature: gene Location: 2400-2579 bp Feature: gene Location: 2660-4516 bp Feature: domain Description: RVT_N Location: 2717-2963 bp Feature: domain Description: RVT_N Location: 27 17 -2963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3017-3680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3017 -3680 bp Feature: domain Description: GIIM Note: maturase Location: 3734-3965 bp Feature: domain Description: GIIM Note: maturase Location: 37 34-3965 bp Feature: domain Description: HNHc Note: nucleases Location: 4169-4340 bp Feature: domain Description: HNHc Note: nucleases Location: 4169-4340 bp Feature: gene Location: 4650-4850 bp Feature: gene Location: 5146-5382 bp Feature: gene Location: 6043-6510 bp Feature: gene Location: 6741-7001 bp Feature: gene Location: 7201-7599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7303-7510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 303-7 510 bp Feature: gene Location: 7647-7898 bp Feature: domain Description: GIIM Note: maturase Location: 7650-7809 bp Feature: domain Description: GIIM Note: maturase Location: 7 650-7 809 bp Feature: gene Location: 8194-8376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAOIW010000051.1 Paenibacillus sp. S3N08 contig51, whole genome shotgun sequence (8463 bp)
Overview 1 RT 1: 2988-7351 bp Neighborhood of RT #1 [2988, 7351] DDE_Tnp_1 RVT-GII Hit Feature: gene Location: 2988-3404 bp Feature: gene Location: 3492-4931 bp Feature: domain Description: DDE_Tnp_1 Location: 3858-4656 bp Feature: domain Description: DDE_Tnp_1 Location: 38 58 -4656 bp Feature: gene Location: 5444-5851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5702-5840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5702-58 40 bp Feature: gene Location: 6672-7106 bp Feature: domain Description: Hit Location: 6696-7071 bp Feature: domain Description: Hit Location: 6696-7071 bp Feature: gene Location: 7208-7351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, Hit (COG0537)

Seq: JAAOIW010000009.1 Paenibacillus sp. S3N08 contig9, whole genome shotgun sequence (310622 bp)
Overview 1 RT 1: 45836-50090 bp Neighborhood of RT #1 [45836, 50090] PBP2_AlgQ_like_4 Sialidase_non-viral Sialidase_non-viral Sialidase_non-viral RVT-GII PP2C_2 Feature: gene Location: 45836-46456 bp Feature: domain Description: PBP2_AlgQ_like_4 Location: 45860-46445 bp Feature: domain Description: PBP2_AlgQ_like_4 Location: 45860-46445 bp Feature: gene Location: 46545-47639 bp Feature: domain Description: Sialidase_non-viral Location: 46683-46767 bp Feature: domain Description: Sialidase_non-viral Location: 46683-46767 bp Feature: domain Description: Sialidase_non-viral Location: 46905-47004 bp Feature: domain Description: Sialidase_non-viral Location: 469 05-47004 bp Feature: domain Description: Sialidase_non-viral Location: 47106-47589 bp Feature: domain Description: Sialidase_non-viral Location: 47106-47589 bp Feature: gene Location: 48092-48484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48101-48422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48101-48422 bp Feature: gene Location: 48871-49674 bp Feature: domain Description: PP2C_2 Location: 48922-49579 bp Feature: domain Description: PP2C_2 Location: 489 22-49 579 bp Feature: gene Location: 49881-50090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_AlgQ_like_4 (cd13583), Sialidase_non-viral (cd15482), RVT-GII, PP2C_2 (pfam13672)