myRT

myRT report for GCA_011516635.2_ASM1151663v2

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Seq: JAAOLC020000001.1 Bradyrhizobium sp. 323S2 strain 1S5 Bradyrhizobium_sp_1S5_Contig1, whole genome shotgun sequence (9941094 bp)
Overview 1 RT 1: 865640-870258 bp 2 RT 2: 876785-880156 bp 3 RT 3: 896748-900751 bp 4 RT 4: 1354175-1359963 bp 5 RT 5: 9172012-9175596 bp Neighborhood of RT #1 [865640, 870258] RVT-GII Neighborhood of RT #2 [876785, 880230] HTH_Tnp_1 TnpB_IS66 RVT-GII DDE_Tnp_IS66 InsE Neighborhood of RT #3 [896748, 900789] RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #4 [1354175, 1359971] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII IS285 IS285 Neighborhood of RT #5 [9172012, 9175596] COG3415 DDE_3 RVT-GII GIIM RVT-GII TnpB_IS66 Feature: gene Location: 865640-868078 bp Feature: gene Location: 868144-868395 bp Feature: gene Location: 868577-868831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868583-868730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868583-868730 bp Feature: gene Location: 868941-869156 bp Feature: gene Location: 869707-870258 bp Feature: gene Location: 876785-877180 bp Feature: domain Description: HTH_Tnp_1 Location: 876815-877001 bp Feature: domain Description: HTH_Tnp_1 Location: 87681 5-877001 bp Feature: gene Location: 877177-877395 bp Feature: domain Description: TnpB_IS66 Location: 877204-877354 bp Feature: domain Description: TnpB_IS66 Location: 877204-877354 bp Feature: gene Location: 877953-878522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878118-878520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8781 1 8-878520 bp Feature: gene Location: 879179-879766 bp Feature: domain Description: DDE_Tnp_IS66 Location: 879182-879740 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8791 82-879740 bp Feature: gene Location: 879808-880230 bp Feature: domain Description: InsE Location: 879880-880156 bp Feature: domain Description: InsE Location: 879880-8801 56 bp Feature: gene Location: 896748-896876 bp Feature: gene Location: 896967-897116 bp Feature: gene Location: 897625-898068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 897841-898036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 897841 -898036 bp Feature: gene Location: 898812-900383 bp Feature: domain Description: LZ_Tnp_IS66 Location: 898908-899139 bp Feature: domain Description: LZ_Tnp_IS66 Location: 898908-8991 39 bp Feature: domain Description: zf-IS66 Location: 899166-899292 bp Feature: domain Description: zf-IS66 Location: 8991 66-899292 bp Feature: domain Description: DDE_Tnp_IS66 Location: 899355-900222 bp Feature: domain Description: DDE_Tnp_IS66 Location: 899355-900222 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 900243-900354 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 900243-900354 bp Feature: gene Location: 900436-900789 bp Feature: domain Description: TnpB_IS66 Location: 900463-900751 bp Feature: domain Description: TnpB_IS66 Location: 900463-900751 bp Feature: gene Location: 1354175-1354528 bp Feature: domain Description: TnpB_IS66 Location: 1354202-1354490 bp Feature: domain Description: TnpB_IS66 Location: 1 354202-1 354490 bp Feature: gene Location: 1354581-1356152 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1354677-1354908 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 354677-1 354908 bp Feature: domain Description: zf-IS66 Location: 1354935-1355061 bp Feature: domain Description: zf-IS66 Location: 1 354935-1 355061 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1355124-1355991 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 3551 24-1 355991 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1356012-1356123 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 35601 2-1 3561 23 bp Feature: gene Location: 1356419-1357717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1356674-1357358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 356674-1 357358 bp Feature: gene Location: 1359367-1359804 bp Feature: domain Description: IS285 Location: 1359388-1359694 bp Feature: domain Description: IS285 Location: 1 359388-1 359694 bp Feature: gene Location: 1359822-1359971 bp Feature: domain Description: IS285 Location: 1359825-1359963 bp Feature: domain Description: IS285 Location: 1 359825-1 359963 bp Feature: gene Location: 9172012-9172266 bp Feature: domain Description: COG3415 Location: 9172036-9172249 bp Feature: domain Description: COG341 5 Location: 91 72036-91 72249 bp Feature: gene Location: 9172356-9172829 bp Feature: domain Description: DDE_3 Location: 9172362-9172743 bp Feature: domain Description: DDE_3 Location: 91 72362-91 72743 bp Feature: gene Location: 9173007-9173639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9173016-9173232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 7301 6-91 73232 bp Feature: domain Description: GIIM Note: maturase Location: 9173313-9173532 bp Feature: domain Description: GIIM Note: maturase Location: 91 7331 3-91 73532 bp Feature: gene Location: 9173667-9174281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9173877-9174279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 73877-91 74279 bp Feature: gene Location: 9174795-9174965 bp Feature: domain Description: TnpB_IS66 Location: 9174798-9174924 bp Feature: domain Description: TnpB_IS66 Location: 91 74798-91 74924 bp Feature: gene Location: 9175318-9175596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_Tnp_1 (pfam01527), TnpB_IS66 (pfam05717), DDE_Tnp_IS66 (pfam03050), InsE (COG2963), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66_C (pfam13817), IS285 (COG3328), COG3415 (Transposase )
DDE_3 (pfam13358), GIIM (pfam08388)

Seq: JAAOLC020000002.1 Bradyrhizobium sp. 323S2 strain 1S5 Bradyrhizobium_sp_1S5_Contig2, whole genome shotgun sequence (184129 bp)
Overview 1 RT 1: 146174-151307 bp Neighborhood of RT #1 [146174, 151309] DDE_Tnp_1_4 RVT-GII Transposase_mut PIN_MtVapC28-VapC30-like Feature: gene Location: 146174-146464 bp Feature: gene Location: 146724-148067 bp Feature: domain Description: DDE_Tnp_1_4 Location: 146760-148041 bp Feature: domain Description: DDE_Tnp_1_4 Location: 146760-148041 bp Feature: gene Location: 148140-149108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148395-149004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148395-149004 bp Feature: gene Location: 149247-149555 bp Feature: gene Location: 149696-151309 bp Feature: domain Description: Transposase_mut Location: 149822-150854 bp Feature: domain Description: Transposase_mut Location: 14982 2 -150854 bp Feature: domain Description: PIN_MtVapC28-VapC30-like Location: 150926-151307 bp Feature: domain Description: PIN_MtVapC2 8-VapC30-like Location: 15092 6-151307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII, Transposase_mut (pfam00872), PIN_MtVapC28-VapC30-like (cd09871)

Seq: JAAOLC020000003.1 Bradyrhizobium sp. 323S2 strain 1S5 Bradyrhizobium_sp_1S5_Contig3, whole genome shotgun sequence (339410 bp)
Overview 1 RT 1: 256448-259288 bp Neighborhood of RT #1 [256448, 259288] DDE_3 RVT-GII GIIM Feature: gene Location: 256448-256708 bp Feature: domain Description: DDE_3 Location: 256451-256622 bp Feature: domain Description: DDE_3 Location: 256451-256622 bp Feature: gene Location: 256721-256876 bp Feature: gene Location: 256935-258209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256989-257706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256989-257706 bp Feature: domain Description: GIIM Note: maturase Location: 257781-258009 bp Feature: domain Description: GIIM Note: maturase Location: 257781-258009 bp Feature: gene Location: 258695-258919 bp Feature: gene Location: 259031-259288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)