myRT

myRT report for GCA_011516665.2_ASM1151666v2

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Seq: JAAOLD020000001.1 Bradyrhizobium sp. 41S5 Bradyrhizobium_sp_41S5_Contig1, whole genome shotgun sequence (8435486 bp)
Overview 1 RT 1: 4630054-4632823 bp 2 RT 2: 4885784-4889427 bp 3 RT 3: 4918791-4922170 bp 4 RT 4: 4939040-4946132 bp 5 RT 5: 4980116-4984741 bp 6 RT 6: 5003850-5008963 bp Neighborhood of RT #1 [4630054, 4632823] RVT-GII DDE_Tnp_IS66 Neighborhood of RT #2 [4885784, 4889427] CIMS_N_terminal_like RVT-GII GIIM Neighborhood of RT #3 [4918791, 4922283] RVT-GII COG3436 TnpB_IS66 Neighborhood of RT #4 [4939040, 4946173] PinE Zn_ribbon_recom COG3436 RVT-GII GIIM COG3547 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #5 [4980116, 4984741] RVT-GII RVT-GII Neighborhood of RT #6 [5003850, 5008965] NodZ COG3415 RVT-GII RVT-GII GIIM DDE_3 DUF4096 Feature: gene Location: 4630054-4630185 bp Feature: gene Location: 4630206-4630334 bp Feature: gene Location: 4630544-4631785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4630745-4631429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4630745-4631 429 bp Feature: gene Location: 4631972-4632202 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4631987-4632155 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4631 987-46321 55 bp Feature: gene Location: 4632650-4632823 bp Feature: gene Location: 4885784-4886131 bp Feature: domain Description: CIMS_N_terminal_like Location: 4885832-4886123 bp Feature: domain Description: CIMS_N_terminal_like Location: 4885832-48861 23 bp Feature: gene Location: 4887790-4887954 bp Feature: gene Location: 4887824-4888480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4887866-4888091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4887866-4888091 bp Feature: domain Description: GIIM Note: maturase Location: 4888172-4888385 bp Feature: domain Description: GIIM Note: maturase Location: 48881 72-4888385 bp Feature: gene Location: 4888564-4889013 bp Feature: gene Location: 4889044-4889427 bp Feature: gene Location: 4918791-4919264 bp Feature: gene Location: 4919285-4919413 bp Feature: gene Location: 4919805-4920863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4919823-4920507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491 9823-4920507 bp Feature: gene Location: 4921050-4921907 bp Feature: domain Description: COG3436 Location: 4921281-4921770 bp Feature: domain Description: COG3436 Location: 4921 281 -4921 770 bp Feature: gene Location: 4921915-4922283 bp Feature: domain Description: TnpB_IS66 Location: 4922008-4922170 bp Feature: domain Description: TnpB_IS66 Location: 4922008-49221 70 bp Feature: gene Location: 4939040-4941130 bp Feature: domain Description: PinE Location: 4939082-4939667 bp Feature: domain Description: PinE Location: 4939082-4939667 bp Feature: domain Description: Zn_ribbon_recom Location: 4940024-4940189 bp Feature: domain Description: Zn_ribbon_recom Location: 4940024-49401 89 bp Feature: gene Location: 4941400-4942212 bp Feature: domain Description: COG3436 Location: 4941703-4942168 bp Feature: domain Description: COG3436 Location: 4941 703-49421 68 bp Feature: gene Location: 4942728-4943978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4942932-4943586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4942932-4943586 bp Feature: domain Description: GIIM Note: maturase Location: 4943673-4943883 bp Feature: domain Description: GIIM Note: maturase Location: 4943673-4943883 bp Feature: gene Location: 4944344-4945348 bp Feature: domain Description: COG3547 Location: 4944356-4945310 bp Feature: domain Description: COG3547 Location: 4944356-494531 0 bp Feature: gene Location: 4945295-4946173 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4945412-4946000 bp Feature: domain Description: DDE_Tnp_IS66 Location: 494541 2-4946000 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4946021-4946132 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4946021 -49461 32 bp Feature: gene Location: 4980116-4982350 bp Feature: gene Location: 4982435-4982623 bp Feature: gene Location: 4982727-4982966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4982733-4982958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4982733-4982958 bp Feature: gene Location: 4983077-4983511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4983083-4983263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4983083-4983263 bp Feature: gene Location: 4983989-4984576 bp Feature: gene Location: 4984598-4984741 bp Feature: gene Location: 5003850-5005181 bp Feature: domain Description: NodZ Location: 5004219-5005167 bp Feature: domain Description: NodZ Location: 500421 9-50051 67 bp Feature: gene Location: 5005724-5006410 bp Feature: domain Description: COG3415 Location: 5005727-5006069 bp Feature: domain Description: COG341 5 Location: 5005727-5006069 bp Feature: gene Location: 5006716-5007159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5006932-5007127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5006932-50071 27 bp Feature: gene Location: 5007253-5007975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5007259-5007586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5007259-5007586 bp Feature: domain Description: GIIM Note: maturase Location: 5007667-5007880 bp Feature: domain Description: GIIM Note: maturase Location: 5007667-5007880 bp Feature: gene Location: 5007986-5008549 bp Feature: domain Description: DDE_3 Location: 5008064-5008448 bp Feature: domain Description: DDE_3 Location: 5008064-5008448 bp Feature: gene Location: 5008735-5008965 bp Feature: domain Description: DUF4096 Location: 5008762-5008963 bp Feature: domain Description: DUF4096 Location: 5008762-5008963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), CIMS_N_terminal_like (cd03312), GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717), PinE (COG1961), Zn_ribbon_recom (pfam13408), COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817)
NodZ (pfam05830), COG3415 (Transposase ), DDE_3 (pfam13358), DUF4096 (pfam13340)