myRT

myRT report for GCA_011523485.1_ASM1152348v1

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Seq: WTGR01000661.1 Acidobacteria bacterium isolate CO36404bin_19 NODE_10781_length_3004_cov_26.377077, whole genome shotgun sequence (3004 bp)
Overview 1 RT 1: 2-2745 bp Neighborhood of RT #1 [2, 2843] Recombinase Zn_ribbon_recom Recombinase HTH_17 RVT-GII GIIM Feature: gene Location: 2-1783 bp Feature: domain Description: Recombinase Location: 308-677 bp Feature: domain Description: Recombinase Location: 308-677 bp Feature: domain Description: Zn_ribbon_recom Location: 734-911 bp Feature: domain Description: Zn_ribbon_recom Location: 734-91 1 bp Feature: domain Description: Recombinase Location: 1436-1562 bp Feature: domain Description: Recombinase Location: 1 436-1 562 bp Feature: domain Description: HTH_17 Location: 1610-1709 bp Feature: domain Description: HTH_1 7 Location: 1 61 0-1 709 bp Feature: gene Location: 1860-2843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-2463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 866-2463 bp Feature: domain Description: GIIM Note: maturase Location: 2535-2745 bp Feature: domain Description: GIIM Note: maturase Location: 2535-2745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), RVT-GII, GIIM (pfam08388)

Seq: WTGR01000938.1 Acidobacteria bacterium isolate CO36404bin_19 NODE_1962_length_8643_cov_14.961924, whole genome shotgun sequence (8643 bp)
Overview 1 RT 1: 2002-4174 bp Neighborhood of RT #1 [2002, 4212] RVT-DGRs acpP MhpC Feature: gene Location: 2002-2256 bp Feature: gene Location: 2479-2712 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2485-2686 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 485-2 686 bp Feature: gene Location: 2934-3158 bp Feature: domain Description: acpP Location: 2940-3150 bp Feature: domain Description: acpP Location: 2 940-3150 bp Feature: gene Location: 3208-4212 bp Feature: domain Description: MhpC Location: 3286-4174 bp Feature: domain Description: MhpC Location: 32 86-4174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, acpP (PRK00982), MhpC (COG0596)

Seq: WTGR01000184.1 Acidobacteria bacterium isolate CO36404bin_19 NODE_484_length_20334_cov_16.043197, whole genome shotgun sequence (20334 bp)
Overview 1 RT 1: 1766-8839 bp Neighborhood of RT #1 [1766, 8844] GrpE DnaK RVT-GII GIIM DnaK TPR_19 TonB_C Feature: gene Location: 1766-2434 bp Feature: domain Description: GrpE Location: 1859-2399 bp Feature: domain Description: GrpE Location: 1859-23 99 bp Feature: gene Location: 2485-2844 bp Feature: domain Description: DnaK Location: 2503-2734 bp Feature: domain Description: DnaK Location: 2503 -273 4 bp Feature: gene Location: 3731-5026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4016-4655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4016-4655 bp Feature: domain Description: GIIM Note: maturase Location: 4727-4946 bp Feature: domain Description: GIIM Note: maturase Location: 4727-4946 bp Feature: gene Location: 5547-6989 bp Feature: domain Description: DnaK Location: 5574-6972 bp Feature: domain Description: DnaK Location: 5574-6972 bp Feature: gene Location: 7042-8844 bp Feature: domain Description: TPR_19 Location: 7381-7570 bp Feature: domain Description: TPR_19 Location: 73 81-7570 bp Feature: domain Description: TonB_C Location: 8614-8839 bp Feature: domain Description: TonB_C Location: 8614-883 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GrpE (pfam01025), DnaK (COG0443), RVT-GII, GIIM (pfam08388), TPR_19 (pfam14559), TonB_C (pfam03544)

Seq: WTGR01000516.1 Acidobacteria bacterium isolate CO36404bin_19 NODE_8695_length_3435_cov_12.308284, whole genome shotgun sequence (3435 bp)
Overview 1 RT 1: 3-2733 bp Neighborhood of RT #1 [3, 2873] PRK06526 RVT-GII GIIM Feature: gene Location: 3-509 bp Feature: gene Location: 511-1311 bp Feature: domain Description: PRK06526 Location: 547-1255 bp Feature: domain Description: PRK06526 Location: 54 7-1255 bp Feature: gene Location: 1497-2873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1833-2451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1833-24 51 bp Feature: domain Description: GIIM Note: maturase Location: 2499-2733 bp Feature: domain Description: GIIM Note: maturase Location: 24 99-2733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06526 (transposase; Provisional), RVT-GII, GIIM (pfam08388)