myRT

myRT report for GCA_011524395.1_ASM1152439v1

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Seq: WTKN01000171.1 Moorea sp. SS36440bin_2 NODE_13_length_95145_cov_31.002534, whole genome shotgun sequence (95145 bp)
Overview 1 RT 1: 5413-13432 bp Neighborhood of RT #1 [5413, 13432] InsQ RVT-UG25 UvrD DEDDh UvrD Feature: gene Location: 5413-5544 bp Feature: gene Location: 5688-7163 bp Feature: domain Description: InsQ Location: 6021-6978 bp Feature: domain Description: InsQ Location: 6021 -6978 bp Feature: gene Location: 7494-10544 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 8985-9384 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 8985-9384 bp Feature: gene Location: 10541-12997 bp Feature: domain Description: UvrD Location: 10556-11837 bp Feature: domain Description: UvrD Location: 1 0556-1 1 837 bp Feature: domain Description: DEDDh Location: 11936-12398 bp Feature: domain Description: DEDDh Location: 1 1 936-1 2398 bp Feature: domain Description: UvrD Location: 12476-12992 bp Feature: domain Description: UvrD Location: 1 2476-1 2992 bp Feature: gene Location: 13226-13432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-UG25, UvrD (COG0210), DEDDh (cd06127)

Seq: WTKN01000044.1 Moorea sp. SS36440bin_2 NODE_141_length_20302_cov_31.976589, whole genome shotgun sequence (20302 bp)
Overview 1 RT 1: 37-4812 bp Neighborhood of RT #1 [37, 4907] TS_Pyrimidine_HMase RVT_N RVT-GII RVT-GII GIIM McrA PRK00964 Lpd Feature: gene Location: 37-606 bp Feature: domain Description: TS_Pyrimidine_HMase Location: 235-589 bp Feature: domain Description: TS_Pyrimidine_HMase Location: 2 35-589 bp Feature: gene Location: 567-2102 bp Feature: domain Description: RVT_N Location: 603-846 bp Feature: domain Description: RVT_N Location: 603-846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1353-1518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1353-1518 bp Feature: domain Description: GIIM Note: maturase Location: 1575-1731 bp Feature: domain Description: GIIM Note: maturase Location: 1575-1731 bp Feature: domain Description: McrA Location: 1773-2073 bp Feature: domain Description: McrA Location: 1773-2 073 bp Feature: gene Location: 2629-3300 bp Feature: domain Description: PRK00964 Location: 2755-2950 bp Feature: domain Description: PRK00964 Location: 2 755-2 950 bp Feature: gene Location: 3399-4907 bp Feature: domain Description: Lpd Location: 3402-4812 bp Feature: domain Description: Lpd Location: 3402 -4812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TS_Pyrimidine_HMase (cl19097), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK00964 (tetrahydromethanopterin S-methyltransferase subunit A; Provisional), Lpd (COG1249)

Seq: WTKN01000062.1 Moorea sp. SS36440bin_2 NODE_1572_length_2415_cov_72.307627, whole genome shotgun sequence (2415 bp)
Overview 1 RT 1: 321-2271 bp Neighborhood of RT #1 [321, 2306] RVT_N RVT-GII GIIM McrA Feature: gene Location: 321-467 bp Feature: gene Location: 594-2306 bp Feature: domain Description: RVT_N Location: 633-879 bp Feature: domain Description: RVT_N Location: 63 3 -879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921-1572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921-1572 bp Feature: domain Description: GIIM Note: maturase Location: 1650-1884 bp Feature: domain Description: GIIM Note: maturase Location: 1650-1884 bp Feature: domain Description: McrA Location: 2001-2271 bp Feature: domain Description: McrA Location: 2001-2271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: WTKN01000371.1 Moorea sp. SS36440bin_2 NODE_1597_length_2396_cov_96.643742, whole genome shotgun sequence (2396 bp)
Overview 1 RT 1: 9-2363 bp Neighborhood of RT #1 [9, 2363] RVT_N RVT-GII GIIM HNH Feature: gene Location: 9-1811 bp Feature: domain Description: RVT_N Location: 54-294 bp Feature: domain Description: RVT_N Location: 54 -294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342-1008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 2-1008 bp Feature: domain Description: GIIM Note: maturase Location: 1107-1341 bp Feature: domain Description: GIIM Note: maturase Location: 1107-134 1 bp Feature: domain Description: HNH Note: nucleases Location: 1569-1707 bp Feature: domain Description: HNH Note: nucleases Location: 1569-1707 bp Feature: gene Location: 2226-2363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: WTKN01000292.1 Moorea sp. SS36440bin_2 NODE_1933_length_2168_cov_53.929957, whole genome shotgun sequence (2168 bp)
Overview 1 RT 1: 81-2166 bp Neighborhood of RT #1 [81, 2166] RVT_N RVT-GII RVT-GII GIIM McrA Feature: gene Location: 81-1589 bp Feature: domain Description: RVT_N Location: 105-351 bp Feature: domain Description: RVT_N Location: 105 -35 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402-828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402-828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-996 bp Feature: domain Description: GIIM Note: maturase Location: 1053-1239 bp Feature: domain Description: GIIM Note: maturase Location: 105 3-1239 bp Feature: domain Description: McrA Location: 1248-1554 bp Feature: domain Description: McrA Location: 1248-15 5 4 bp Feature: gene Location: 1972-2166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: WTKN01000225.1 Moorea sp. SS36440bin_2 NODE_337_length_7951_cov_8.781282, whole genome shotgun sequence (7951 bp)
Overview 1 RT 1: 881-7948 bp Neighborhood of RT #1 [881, 7948] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 881-1084 bp Feature: gene Location: 1324-1806 bp Feature: gene Location: 2010-7034 bp Feature: domain Description: retropepsin_like Location: 2415-2658 bp Feature: domain Description: retropepsin_like Location: 2415-26 58 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4050-4227 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4050-4227 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 4536-4902 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 4536 -4902 bp Feature: domain Description: Integrase_H2C2 Location: 5514-5682 bp Feature: domain Description: Integrase_H2C2 Location: 5514-56 82 bp Feature: domain Description: rve Location: 5733-6069 bp Feature: domain Description: rve Location: 5733-6 06 9 bp Feature: gene Location: 7085-7948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG11/RVT-DGRs/RVT-UG26(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: WTKN01000189.1 Moorea sp. SS36440bin_2 NODE_539_length_4916_cov_20.217034, whole genome shotgun sequence (4916 bp)
Overview 1 RT 1: 495-4428 bp Neighborhood of RT #1 [495, 4862] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 495-4862 bp Feature: domain Description: retropepsin_like Location: 1779-2046 bp Feature: domain Description: retropepsin_like Location: 17 7 9-2046 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2832-3012 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2832-3012 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3300-3633 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3300-3633 bp Feature: domain Description: Integrase_H2C2 Location: 3867-4035 bp Feature: domain Description: Integrase_H2C2 Location: 3867 -4035 bp Feature: domain Description: rve Location: 4083-4428 bp Feature: domain Description: rve Location: 4083-4428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG3/RVT-DGRs/RVT-UG26/RVT-UG11(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: WTKN01000226.1 Moorea sp. SS36440bin_2 NODE_61_length_40386_cov_32.091220, whole genome shotgun sequence (40386 bp)
Overview 1 RT 1: 77-1997 bp Neighborhood of RT #1 [77, 1997] RVT-Retrons Feature: gene Location: 77-1489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 623-1244 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 623-1244 bp Feature: gene Location: 1584-1712 bp Feature: gene Location: 1827-1997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: WTKN01000005.1 Moorea sp. SS36440bin_2 NODE_705_length_4068_cov_30.922751, whole genome shotgun sequence (4068 bp)
Overview 1 RT 1: 203-3688 bp Neighborhood of RT #1 [203, 3688] ComEB TIGR00284 RVT_N RVT-GII GIIM McrA Feature: gene Location: 203-775 bp Feature: domain Description: ComEB Location: 212-686 bp Feature: domain Description: ComEB Location: 212-686 bp Feature: gene Location: 1149-1367 bp Feature: domain Description: TIGR00284 Location: 1164-1362 bp Feature: domain Description: TIGR00284 Location: 1164-1362 bp Feature: gene Location: 1570-3312 bp Feature: domain Description: RVT_N Location: 1615-1861 bp Feature: domain Description: RVT_N Location: 1615-1861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1903-2569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19 03-2569 bp Feature: domain Description: GIIM Note: maturase Location: 2668-2881 bp Feature: domain Description: GIIM Note: maturase Location: 2668-2881 bp Feature: domain Description: McrA Location: 2995-3274 bp Feature: domain Description: McrA Location: 29 9 5-3274 bp Feature: gene Location: 3545-3688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComEB (TIGR02571), TIGR00284 (dihydropteroate synthase-related protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: WTKN01000070.1 Moorea sp. SS36440bin_2 NODE_787_length_3780_cov_24.870872, whole genome shotgun sequence (3780 bp)
Overview 1 RT 1: 85-3779 bp Neighborhood of RT #1 [85, 3779] YhhI DDE_Tnp_1_assoc RVT_N RVT-GII RVT-GII GIIM McrA Feature: gene Location: 85-423 bp Feature: domain Description: YhhI Location: 154-382 bp Feature: domain Description: YhhI Location: 154-382 bp Feature: gene Location: 869-1138 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 887-1103 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 887-110 3 bp Feature: gene Location: 2254-3648 bp Feature: domain Description: RVT_N Location: 2260-2419 bp Feature: domain Description: RVT_N Location: 2260-2419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2470-2893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2470-2893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2899-3064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2899-3064 bp Feature: domain Description: GIIM Note: maturase Location: 3121-3268 bp Feature: domain Description: GIIM Note: maturase Location: 3121-3268 bp Feature: domain Description: McrA Location: 3319-3622 bp Feature: domain Description: McrA Location: 3319-3622 bp Feature: gene Location: 3597-3779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), DDE_Tnp_1_assoc (pfam13808), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: WTKN01000177.1 Moorea sp. SS36440bin_2 NODE_97_length_29869_cov_35.620715, whole genome shotgun sequence (29869 bp)
Overview 1 RT 1: 3-4097 bp Neighborhood of RT #1 [3, 4099] RVT_N RVT-GII GIIM McrA LolD PRK07424 Feature: gene Location: 3-185 bp Feature: gene Location: 191-1621 bp Feature: domain Description: RVT_N Location: 194-299 bp Feature: domain Description: RVT_N Location: 194-299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-944 bp Feature: domain Description: GIIM Note: maturase Location: 1007-1193 bp Feature: domain Description: GIIM Note: maturase Location: 1007-11 93 bp Feature: domain Description: McrA Location: 1220-1505 bp Feature: domain Description: McrA Location: 1220-1505 bp Feature: gene Location: 1954-2703 bp Feature: domain Description: LolD Location: 2044-2686 bp Feature: domain Description: LolD Location: 2044-2686 bp Feature: gene Location: 2879-4099 bp Feature: domain Description: PRK07424 Location: 2888-4097 bp Feature: domain Description: PRK07424 Location: 2888-4097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), LolD (COG1136), PRK07424 (bifunctional sterol desaturase/short chain dehydrogenase; Validated)