myRT

myRT report for GCA_011601265.1_ASM1160126v1

Download annotations/find similar RTs

Seq: JAAOLX010000002.1 Iodobacter sp. HSC-16F04 NODE_2_length_562641_cov_33.409366, whole genome shotgun sequence (562641 bp)
Overview 1 RT 1: 87291-91125 bp Neighborhood of RT #1 [87291, 91125] Tar CSP_CDS RVT-Retrons Feature: gene Location: 87291-88928 bp Feature: domain Description: Tar Location: 87804-88923 bp Feature: domain Description: Tar Location: 87804-88923 bp Feature: gene Location: 89099-89323 bp Feature: domain Description: CSP_CDS Location: 89117-89312 bp Feature: domain Description: CSP_CDS Location: 891 1 7-8931 2 bp Feature: gene Location: 89316-90494 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89466-90030 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89466-90030 bp Feature: gene Location: 90537-90731 bp Feature: gene Location: 90901-91125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CSP_CDS (cd04458), RVT-Retrons

Seq: JAAOLX010000004.1 Iodobacter sp. HSC-16F04 NODE_4_length_445988_cov_33.160593, whole genome shotgun sequence (445988 bp)
Overview 1 RT 1: 170145-174620 bp Neighborhood of RT #1 [170145, 174628] InsE PHA02517 RVT-GII GIIM PHA02517 PRK09692 Feature: gene Location: 170145-170426 bp Feature: domain Description: InsE Location: 170157-170418 bp Feature: domain Description: InsE Location: 170157-170418 bp Feature: gene Location: 170483-170860 bp Feature: domain Description: PHA02517 Location: 170489-170840 bp Feature: domain Description: PHA02 517 Location: 170489-170840 bp Feature: gene Location: 171494-173026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171767-172505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171767-172 505 bp Feature: domain Description: GIIM Note: maturase Location: 172577-172778 bp Feature: domain Description: GIIM Note: maturase Location: 172 577-172 778 bp Feature: gene Location: 173237-173584 bp Feature: domain Description: PHA02517 Location: 173240-173576 bp Feature: domain Description: PHA02 517 Location: 1732 40-173576 bp Feature: gene Location: 173600-174628 bp Feature: domain Description: PRK09692 Location: 173726-174620 bp Feature: domain Description: PRK09692 Location: 17372 6-17462 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK09692 (Integrase; provisional)