myRT

myRT report for GCA_011605415.1_ASM1160541v1

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Seq: JAAQGO010000028.1 Escherichia coli strain RW8-2 NODE_28_length_58033_cov_141.620540, whole genome shotgun sequence (58033 bp)
Overview 1 RT 1: 44-7936 bp Neighborhood of RT #1 [44, 7947] RVT-UG8 INT_Rci_Hp1_C INT_P4_C mutS1 Feature: gene Location: 44-247 bp Feature: gene Location: 486-2504 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1056-1506 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 056-1 506 bp Feature: gene Location: 3760-5220 bp Feature: domain Description: INT_Rci_Hp1_C Location: 4135-4342 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 41 35-4342 bp Feature: domain Description: INT_P4_C Location: 4561-5098 bp Feature: domain Description: INT_P4_C Location: 4561 -5098 bp Feature: gene Location: 5365-7947 bp Feature: domain Description: mutS1 Location: 5416-7936 bp Feature: domain Description: mutS1 Location: 541 6-7936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070)

Seq: JAAQGO010000035.1 Escherichia coli strain RW8-2 NODE_35_length_43807_cov_125.955866, whole genome shotgun sequence (43807 bp)
Overview 1 RT 1: 3286-7488 bp Neighborhood of RT #1 [3286, 7490] DDE_Tnp_IS1 InsA RVT-GII potG PRK10682 Feature: gene Location: 3286-3663 bp Feature: domain Description: DDE_Tnp_IS1 Location: 3289-3661 bp Feature: domain Description: DDE_Tnp_IS1 Location: 32 89-3661 bp Feature: gene Location: 3708-3983 bp Feature: domain Description: InsA Location: 3711-3975 bp Feature: domain Description: InsA Location: 3711-3975 bp Feature: gene Location: 4135-5622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4540-5230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4540-52 30 bp Feature: gene Location: 5792-6364 bp Feature: domain Description: potG Location: 5876-6347 bp Feature: domain Description: potG Location: 5876-6347 bp Feature: gene Location: 6378-7490 bp Feature: domain Description: PRK10682 Location: 6381-7488 bp Feature: domain Description: PRK10682 Location: 6381-7488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, potG (PRK11607), PRK10682 (putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional)