myRT

myRT report for GCA_011620495.1_ASM1162049v1

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Seq: WOZD01000070.1 Smithella sp. isolate WOFB15 NODE_10256_length_4075_cov_191.739801, whole genome shotgun sequence (4075 bp)
Overview 1 RT 1: 2212-3929 bp Neighborhood of RT #1 [2212, 3934] RVT-GII GIIM COG3636 upstrm_HI1419 Feature: gene Location: 2212-2367 bp Feature: gene Location: 2397-2681 bp Feature: gene Location: 2714-3325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2750-3044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2750-3044 bp Feature: domain Description: GIIM Note: maturase Location: 3119-3317 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 9-331 7 bp Feature: gene Location: 3335-3634 bp Feature: domain Description: COG3636 Location: 3341-3623 bp Feature: domain Description: COG3636 Location: 3341 -3623 bp Feature: gene Location: 3644-3934 bp Feature: domain Description: upstrm_HI1419 Location: 3653-3929 bp Feature: domain Description: upstrm_HI1 41 9 Location: 3653-3929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3636 (DNA-binding prophage protein ), upstrm_HI1419 (TIGR02683)

Seq: WOZD01000102.1 Smithella sp. isolate WOFB15 NODE_154_length_63065_cov_128.936931, whole genome shotgun sequence (63065 bp)
Overview 1 RT 1: 15070-21508 bp Neighborhood of RT #1 [15070, 21537] RVT-CRISPR Cas1_I-II-III HTH_ICLR HATPase_c_2 DUF4325 Feature: gene Location: 15070-15954 bp Feature: gene Location: 15956-16465 bp Feature: gene Location: 16508-19144 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 17489-18098 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 17489-18098 bp Feature: domain Description: Cas1_I-II-III Location: 18179-19109 bp Feature: domain Description: Cas1_I-II-III Location: 18179-19109 bp Feature: gene Location: 19418-19702 bp Feature: gene Location: 20518-21537 bp Feature: domain Description: HTH_ICLR Location: 20539-20659 bp Feature: domain Description: HTH_ICLR Location: 2 0539-2 0659 bp Feature: domain Description: HATPase_c_2 Location: 20782-21118 bp Feature: domain Description: HATPase_c_2 Location: 2 0782 -2 1118 bp Feature: domain Description: DUF4325 Location: 21346-21508 bp Feature: domain Description: DUF432 5 Location: 2 1346-2 1508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), HTH_ICLR (smart00346), HATPase_c_2 (pfam13581), DUF4325 (pfam14213)

Seq: WOZD01000096.1 Smithella sp. isolate WOFB15 NODE_5766_length_5945_cov_114.779287, whole genome shotgun sequence (5945 bp)
Overview 1 RT 1: 308-4660 bp Neighborhood of RT #1 [308, 4686] COG4584 PRK09183 RVT-GII Ferritin_like_AB TIGR00159 YbbR Feature: gene Location: 308-1021 bp Feature: domain Description: COG4584 Location: 317-578 bp Feature: domain Description: COG4584 Location: 3 17-578 bp Feature: gene Location: 1009-1788 bp Feature: domain Description: PRK09183 Location: 1018-1726 bp Feature: domain Description: PRK09183 Location: 1018-1726 bp Feature: gene Location: 1823-2284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2081-2219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2081-2219 bp Feature: gene Location: 2588-3067 bp Feature: domain Description: Ferritin_like_AB Location: 2612-3047 bp Feature: domain Description: Ferritin_like_AB Location: 2612-3 047 bp Feature: gene Location: 3211-4686 bp Feature: domain Description: TIGR00159 Location: 3376-3991 bp Feature: domain Description: TIGR00159 Location: 3 3 76-3 991 bp Feature: domain Description: YbbR Location: 4144-4660 bp Feature: domain Description: YbbR Location: 4144-4660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), RVT-GII, Ferritin_like_AB (cd01045), TIGR00159 (TIGR00159 family protein), YbbR (pfam07949)

Seq: WOZD01000050.1 Smithella sp. isolate WOFB15 NODE_66_length_90805_cov_108.813994, whole genome shotgun sequence (90805 bp)
Overview 1 RT 1: 45884-47491 bp Neighborhood of RT #1 [45884, 47595] COG5304 COG2929 RVT-GII RelB_DinJ Feature: gene Location: 45884-46099 bp Feature: domain Description: COG5304 Location: 45902-46061 bp Feature: domain Description: COG5304 Location: 4 5902-4 6061 bp Feature: gene Location: 46103-46387 bp Feature: domain Description: COG2929 Location: 46112-46376 bp Feature: domain Description: COG2929 Location: 4 6112-4 6376 bp Feature: gene Location: 46475-46747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46511-46634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6511-4 6634 bp Feature: gene Location: 46780-47064 bp Feature: gene Location: 47224-47595 bp Feature: domain Description: RelB_DinJ Location: 47257-47491 bp Feature: domain Description: RelB_DinJ Location: 4 7257-4 74 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5304 (Predicted DNA binding protein, CopG/RHH family ), COG2929 (Uncharacterized conserved protein, DUF497 family ), RVT-GII, RelB_DinJ (TIGR02384)

Seq: WOZD01000066.1 Smithella sp. isolate WOFB15 NODE_938_length_21697_cov_153.039599, whole genome shotgun sequence (21697 bp)
Overview 1 RT 1: 18174-21360 bp Neighborhood of RT #1 [18174, 21695] DUF4143 RVT-GII RVT-GII PbH1 PbH1 PbH1 PbH1 PbH1 PbH1 PbH1 para_beta_helix Feature: gene Location: 18174-18920 bp Feature: domain Description: DUF4143 Location: 18210-18501 bp Feature: domain Description: DUF4143 Location: 18210-185 01 bp Feature: gene Location: 19078-19221 bp Feature: gene Location: 19382-19804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19601-19721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19601-19721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19730-19802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19730-19802 bp Feature: gene Location: 20304-21695 bp Feature: domain Description: PbH1 Location: 20352-20409 bp Feature: domain Description: PbH1 Location: 2035 2-20409 bp Feature: domain Description: PbH1 Location: 20496-20550 bp Feature: domain Description: PbH1 Location: 20496-205 5 0 bp Feature: domain Description: PbH1 Location: 20640-20694 bp Feature: domain Description: PbH1 Location: 20640-20694 bp Feature: domain Description: PbH1 Location: 20781-20838 bp Feature: domain Description: PbH1 Location: 20781-20838 bp Feature: domain Description: PbH1 Location: 20925-20979 bp Feature: domain Description: PbH1 Location: 20925 -20979 bp Feature: domain Description: PbH1 Location: 21066-21120 bp Feature: domain Description: PbH1 Location: 21066-21120 bp Feature: domain Description: PbH1 Location: 21207-21261 bp Feature: domain Description: PbH1 Location: 21207-21261 bp Feature: domain Description: para_beta_helix Location: 21309-21360 bp Feature: domain Description: para_beta_helix Location: 21309-21360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4143 (pfam13635), RVT-GII, PbH1 (smart00710), para_beta_helix (TIGR03804)