myRT

myRT report for GCA_011682065.1_ASM1168206v1

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Seq: VUYU01000026.1 Massilia sp. CCM 8692 NODE_26_length_97581_cov_6.187381, whole genome shotgun sequence (97581 bp)
Overview 1 RT 1: 793-3734 bp Neighborhood of RT #1 [793, 3826] PilA RVT-GII PilA Feature: gene Location: 793-1269 bp Feature: domain Description: PilA Location: 820-1177 bp Feature: domain Description: PilA Location: 820-1 1 77 bp Feature: gene Location: 1785-2036 bp Feature: gene Location: 2237-2689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2240-2567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2240-2567 bp Feature: gene Location: 2961-3143 bp Feature: gene Location: 3350-3826 bp Feature: domain Description: PilA Location: 3377-3734 bp Feature: domain Description: PilA Location: 3377-3734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PilA (COG4969)

Seq: VUYU01000050.1 Massilia sp. CCM 8692 NODE_50_length_16808_cov_5.703615, whole genome shotgun sequence (16808 bp)
Overview 1 RT 1: 8797-15815 bp Neighborhood of RT #1 [8797, 16549] WGR_DNA_ligase RVT-Retrons Feature: gene Location: 8797-12618 bp Feature: domain Description: WGR_DNA_ligase Location: 9511-9736 bp Feature: domain Description: WGR_DNA_ligase Location: 9511-9736 bp Feature: gene Location: 12615-14270 bp Feature: gene Location: 14636-16549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15200-15815 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152 00-15815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, WGR_DNA_ligase (cd07998)

Seq: VUYU01000065.1 Massilia sp. CCM 8692 NODE_65_length_1835_cov_18.984192, whole genome shotgun sequence (1835 bp)
Overview 1 RT 1: 1-1584 bp Neighborhood of RT #1 [1, 1745] RVT-GII GIIM Feature: gene Location: 1-183 bp Feature: gene Location: 384-1745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711-1326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711-13 26 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1584 bp Feature: domain Description: GIIM Note: maturase Location: 13 86-1584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VUYU01000008.1 Massilia sp. CCM 8692 NODE_8_length_348018_cov_6.022751, whole genome shotgun sequence (348018 bp)
Overview 1 RT 1: 204465-209942 bp Neighborhood of RT #1 [204465, 209942] P-type_ATPase_HM_ZosA_PfeT-like RVT-Retrons Feature: gene Location: 204465-206585 bp Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 204606-206502 bp Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 204 606-206502 bp Feature: gene Location: 206653-207072 bp Feature: gene Location: 207430-208770 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 207889-208528 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 207889-208528 bp Feature: gene Location: 208843-209373 bp Feature: gene Location: 209370-209942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-type_ATPase_HM_ZosA_PfeT-like (cd07551), RVT-Retrons

Seq: VUYU01000009.1 Massilia sp. CCM 8692 NODE_9_length_197410_cov_6.255212, whole genome shotgun sequence (197410 bp)
Overview 1 RT 1: 189643-196919 bp Neighborhood of RT #1 [189643, 197155] RhsA RhsA RhsA RHS_repeat RhsA RhsA RhsA RVT-GII Feature: gene Location: 189643-190581 bp Feature: gene Location: 190844-195361 bp Feature: domain Description: RhsA Location: 192389-192608 bp Feature: domain Description: RhsA Location: 192389-192608 bp Feature: domain Description: RhsA Location: 192788-193064 bp Feature: domain Description: RhsA Location: 192788-193064 bp Feature: domain Description: RhsA Location: 193070-193595 bp Feature: domain Description: RhsA Location: 193070-1935 95 bp Feature: domain Description: RHS_repeat Location: 193718-193760 bp Feature: domain Description: RHS_repeat Location: 193718-193760 bp Feature: domain Description: RhsA Location: 193799-194015 bp Feature: domain Description: RhsA Location: 193799-194015 bp Feature: domain Description: RhsA Location: 194069-194225 bp Feature: domain Description: RhsA Location: 194069-194225 bp Feature: domain Description: RhsA Location: 194297-194987 bp Feature: domain Description: RhsA Location: 194297-194987 bp Feature: gene Location: 196370-197155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196676-196919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196676-196919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RHS_repeat (pfam05593), RVT-GII