myRT

myRT report for GCA_011682145.1_ASM1168214v1

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Seq: WHJH01000021.1 Massilia sp. CCM 8733 NODE_21_length_101944_cov_5.706709, whole genome shotgun sequence (101944 bp)
Overview 1 RT 1: 80712-85405 bp Neighborhood of RT #1 [80712, 85443] PilA PilA RVT-GII GIIM PilA FHA COG3456 Feature: gene Location: 80712-81158 bp Feature: domain Description: PilA Location: 80748-81105 bp Feature: domain Description: PilA Location: 80748-81 1 05 bp Feature: gene Location: 81466-81909 bp Feature: domain Description: PilA Location: 81490-81844 bp Feature: domain Description: PilA Location: 81 490-81 844 bp Feature: gene Location: 82405-83601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82570-83179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82570-831 79 bp Feature: domain Description: GIIM Note: maturase Location: 83239-83443 bp Feature: domain Description: GIIM Note: maturase Location: 83239-83443 bp Feature: gene Location: 84191-84634 bp Feature: domain Description: PilA Location: 84227-84470 bp Feature: domain Description: PilA Location: 84227-84470 bp Feature: gene Location: 84850-85443 bp Feature: domain Description: FHA Location: 84922-85102 bp Feature: domain Description: FHA Location: 84922-851 02 bp Feature: domain Description: COG3456 Location: 85279-85405 bp Feature: domain Description: COG3456 Location: 85279-85405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PilA (COG4969), RVT-GII, GIIM (pfam08388), FHA (smart00240), COG3456 (Predicted component of the type VI protein secretion system, contains a FHA domain )

Seq: WHJH01000043.1 Massilia sp. CCM 8733 NODE_43_length_61842_cov_5.687061, whole genome shotgun sequence (61842 bp)
Overview 1 RT 1: 27609-32651 bp Neighborhood of RT #1 [27609, 32651] MFS_FucP_MFSD4_like PurR RVT-Retrons Feature: gene Location: 27609-28838 bp Feature: domain Description: MFS_FucP_MFSD4_like Location: 27642-28812 bp Feature: domain Description: MFS_FucP_MFSD4_like Location: 2 7642 -2 8812 bp Feature: gene Location: 28890-29900 bp Feature: domain Description: PurR Location: 28896-29886 bp Feature: domain Description: PurR Location: 2 8896-2 9886 bp Feature: gene Location: 30138-31478 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30597-31236 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30597-312 36 bp Feature: gene Location: 31396-32082 bp Feature: gene Location: 32079-32651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_FucP_MFSD4_like (cd17333), PurR (COG1609), RVT-Retrons

Seq: WHJH01000085.1 Massilia sp. CCM 8733 NODE_85_length_16934_cov_5.117332, whole genome shotgun sequence (16934 bp)
Overview 1 RT 1: 233-4409 bp Neighborhood of RT #1 [233, 7291] RVT-Retrons WGR_DNA_ligase Feature: gene Location: 233-2146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 797-1412 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 797-1412 bp Feature: gene Location: 2502-4103 bp Feature: gene Location: 4163-7291 bp Feature: domain Description: WGR_DNA_ligase Location: 4184-4409 bp Feature: domain Description: WGR_DNA_ligase Location: 4184-4409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, WGR_DNA_ligase (cd07998)