myRT

myRT report for GCA_011682155.1_ASM1168215v1

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Seq: WHJI01000015.1 Massilia sp. CCM 8734 NODE_15_length_171221_cov_9.270921, whole genome shotgun sequence (171221 bp)
Overview 1 RT 1: 153147-157911 bp Neighborhood of RT #1 [153147, 158048] MFS_FucP_MFSD4_like PurR RVT-Retrons RVT-Retrons AAA_33 Feature: gene Location: 153147-154376 bp Feature: domain Description: MFS_FucP_MFSD4_like Location: 153180-154350 bp Feature: domain Description: MFS_FucP_MFSD4_like Location: 1 531 80-1 54350 bp Feature: gene Location: 154428-155438 bp Feature: domain Description: PurR Location: 154434-155424 bp Feature: domain Description: PurR Location: 1 54434-1 55424 bp Feature: gene Location: 155675-156601 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 156134-156599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 561 34-1 56599 bp Feature: gene Location: 156641-157039 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 156644-156773 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 56644-1 56773 bp Feature: gene Location: 157461-157604 bp Feature: gene Location: 157605-158048 bp Feature: domain Description: AAA_33 Location: 157617-157911 bp Feature: domain Description: AAA_33 Location: 1 5761 7-1 5791 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_FucP_MFSD4_like (cd17333), PurR (COG1609), RVT-Retrons, AAA_33 (pfam13671)

Seq: WHJI01000020.1 Massilia sp. CCM 8734 NODE_20_length_120848_cov_9.535938, whole genome shotgun sequence (120848 bp)
Overview 1 RT 1: 104299-112599 bp Neighborhood of RT #1 [104299, 112599] COG2509 ligand_gated_channel RVT-GII GIIM COG3666 DDE_Tnp_1_6 Feature: gene Location: 104299-106017 bp Feature: domain Description: COG2509 Location: 104410-106009 bp Feature: domain Description: COG2 509 Location: 104410-106009 bp Feature: gene Location: 106295-109153 bp Feature: domain Description: ligand_gated_channel Location: 106553-109151 bp Feature: domain Description: ligand_gated_channel Location: 106553-109151 bp Feature: gene Location: 109615-110862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109948-110563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109948-110563 bp Feature: domain Description: GIIM Note: maturase Location: 110620-110764 bp Feature: domain Description: GIIM Note: maturase Location: 11062 0-110764 bp Feature: gene Location: 110897-112261 bp Feature: domain Description: COG3666 Location: 110954-111353 bp Feature: domain Description: COG3666 Location: 110954-111353 bp Feature: domain Description: DDE_Tnp_1_6 Location: 112040-112235 bp Feature: domain Description: DDE_Tnp_1_6 Location: 112 040-112 2 35 bp Feature: gene Location: 112444-112599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2509 (FAD-dependent dehydrogenase ), ligand_gated_channel (cd01347), RVT-GII, GIIM (pfam08388), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: WHJI01000072.1 Massilia sp. CCM 8734 NODE_72_length_16849_cov_9.145377, whole genome shotgun sequence (16849 bp)
Overview 1 RT 1: 236-5101 bp Neighborhood of RT #1 [236, 7986] RVT-Retrons WGR_DNA_ligase Feature: gene Location: 236-2149 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 800-1415 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 800-1415 bp Feature: gene Location: 2513-4168 bp Feature: gene Location: 4165-7986 bp Feature: domain Description: WGR_DNA_ligase Location: 4879-5101 bp Feature: domain Description: WGR_DNA_ligase Location: 4879-5101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, WGR_DNA_ligase (cd07998)