myRT

myRT report for GCA_011682485.1_ASM1168248v1

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Seq: JAACEN010000927.1 Nitrospiraceae bacterium isolate OTbin.72 scaffold_36963, whole genome shotgun sequence (3520 bp)
Overview 1 RT 1: 1283-3011 bp Neighborhood of RT #1 [1283, 3292] GIY-YIG_SLX1_like DUF1566 RVT-DGRs Feature: gene Location: 1283-1540 bp Feature: domain Description: GIY-YIG_SLX1_like Location: 1295-1490 bp Feature: domain Description: GIY-YIG_SLX1 _like Location: 1 295-1 490 bp Feature: gene Location: 1839-2018 bp Feature: domain Description: DUF1566 Location: 1875-1995 bp Feature: domain Description: DUF1 566 Location: 1 875-1 995 bp Feature: gene Location: 2198-3292 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2312-3011 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 231 2-301 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIY-YIG_SLX1_like (cd10449), DUF1566 (pfam07603), RVT-DGRs

Seq: JAACEN010000779.1 Nitrospiraceae bacterium isolate OTbin.72 scaffold_43471, whole genome shotgun sequence (5291 bp)
Overview 1 RT 1: 2-1694 bp Neighborhood of RT #1 [2, 1694] RVT-GII GIIM Feature: gene Location: 2-742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26-236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6-2 36 bp Feature: domain Description: GIIM Note: maturase Location: 290-521 bp Feature: domain Description: GIIM Note: maturase Location: 2 90-52 1 bp Feature: gene Location: 803-1255 bp Feature: gene Location: 1323-1694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAACEN010000257.1 Nitrospiraceae bacterium isolate OTbin.72 scaffold_45749, whole genome shotgun sequence (2527 bp)
Overview 1 RT 1: 793-2497 bp Neighborhood of RT #1 [793, 2526] DUF2461 gyrB RVT-GII Feature: gene Location: 793-1491 bp Feature: domain Description: DUF2461 Location: 826-1450 bp Feature: domain Description: DUF2461 Location: 826-1450 bp Feature: gene Location: 1587-2159 bp Feature: domain Description: gyrB Location: 1593-2127 bp Feature: domain Description: gyrB Location: 1593 -2127 bp Feature: gene Location: 2182-2526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2188-2497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2188-2497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2461 (pfam09365), gyrB (TIGR01059), RVT-GII

Seq: JAACEN010000957.1 Nitrospiraceae bacterium isolate OTbin.72 scaffold_47427, whole genome shotgun sequence (5391 bp)
Overview 1 RT 1: 2-3364 bp Neighborhood of RT #1 [2, 3372] RVT-UG19 COG4705 OmpR Feature: gene Location: 2-1720 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 8-473 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 8-4 73 bp Feature: gene Location: 1979-2620 bp Feature: domain Description: COG4705 Location: 1982-2585 bp Feature: domain Description: COG4 705 Location: 1982-2585 bp Feature: gene Location: 2704-3372 bp Feature: domain Description: OmpR Location: 2707-3364 bp Feature: domain Description: OmpR Location: 2707-3364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG19, COG4705 (Uncharacterized membrane-anchored protein ), OmpR (COG0745)

Seq: JAACEN010000527.1 Nitrospiraceae bacterium isolate OTbin.72 scaffold_818, whole genome shotgun sequence (17732 bp)
Overview 1 RT 1: 1924-6666 bp Neighborhood of RT #1 [1924, 6666] Cas1_I-II-III COG4951 RVT-GII TPR TPR_1 Feature: gene Location: 1924-2910 bp Feature: domain Description: Cas1_I-II-III Location: 1933-2869 bp Feature: domain Description: Cas1_I-II-III Location: 1933-2869 bp Feature: gene Location: 2921-4081 bp Feature: domain Description: COG4951 Location: 3038-3434 bp Feature: domain Description: COG495 1 Location: 3038-3434 bp Feature: gene Location: 4138-5751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4360-4963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4360-4963 bp Feature: domain Description: TPR Location: 5119-5341 bp Feature: domain Description: TPR Location: 5 119-5 341 bp Feature: domain Description: TPR_1 Location: 5464-5548 bp Feature: domain Description: TPR_1 Location: 5 464-5 5 48 bp Feature: gene Location: 5866-6126 bp Feature: gene Location: 6469-6666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas1_I-II-III (cl00656), COG4951 (Uncharacterized protein ), RVT-GII, TPR (smart00028), TPR_1 (pfam00515)

Seq: JAACEN010000209.1 Nitrospiraceae bacterium isolate OTbin.72 scaffold_95527, whole genome shotgun sequence (3794 bp)
Overview 1 RT 1: 408-3107 bp Neighborhood of RT #1 [408, 3107] RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 408-629 bp Feature: gene Location: 684-1331 bp Feature: domain Description: RVT_N Location: 711-948 bp Feature: domain Description: RVT_N Location: 711-948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 993-1302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 993-1302 bp Feature: gene Location: 1388-2167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1391-1655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1391-16 55 bp Feature: domain Description: GIIM Note: maturase Location: 1709-1940 bp Feature: domain Description: GIIM Note: maturase Location: 1709-1940 bp Feature: gene Location: 2381-2713 bp Feature: gene Location: 2853-3107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)