myRT

myRT report for GCA_011682565.1_ASM1168256v1

Download annotations/find similar RTs

Seq: JAACEJ010000430.1 Actinobacteria bacterium isolate OTbin.62 scaffold_17547, whole genome shotgun sequence (4158 bp)
Overview 1 RT 1: 3-4111 bp Neighborhood of RT #1 [3, 4155] RVT-CRISPR-like GIIM TPR COG4951 DUF1887 DUF1887 Feature: gene Location: 3-2774 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 213-801 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 21 3-801 bp Feature: domain Description: GIIM Note: maturase Location: 855-1011 bp Feature: domain Description: GIIM Note: maturase Location: 855-1 01 1 bp Feature: domain Description: TPR Location: 1056-1314 bp Feature: domain Description: TPR Location: 1 056-1 31 4 bp Feature: domain Description: COG4951 Location: 1503-2235 bp Feature: domain Description: COG4951 Location: 1 503-2235 bp Feature: gene Location: 2889-3020 bp Feature: gene Location: 3241-4155 bp Feature: domain Description: DUF1887 Location: 3277-3520 bp Feature: domain Description: DUF1 887 Location: 3277-3520 bp Feature: domain Description: DUF1887 Location: 3706-4111 bp Feature: domain Description: DUF1 887 Location: 3706-41 1 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), TPR (smart00028), COG4951 (Uncharacterized protein ), DUF1887 (pfam09002)

Seq: JAACEJ010000543.1 Actinobacteria bacterium isolate OTbin.62 scaffold_25105, whole genome shotgun sequence (3458 bp)
Overview 1 RT 1: 2-2245 bp Neighborhood of RT #1 [2, 2319] RVT-GII GIIM StbD Feature: gene Location: 2-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197-812 bp Feature: domain Description: GIIM Note: maturase Location: 881-1100 bp Feature: domain Description: GIIM Note: maturase Location: 881-1100 bp Feature: gene Location: 1545-1757 bp Feature: gene Location: 2023-2319 bp Feature: domain Description: StbD Location: 2038-2245 bp Feature: domain Description: StbD Location: 2 038-2 2 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), StbD (COG2161)

Seq: JAACEJ010000062.1 Actinobacteria bacterium isolate OTbin.62 scaffold_2681, whole genome shotgun sequence (10989 bp)
Overview 1 RT 1: 641-5027 bp Neighborhood of RT #1 [641, 5032] NACHT COG5635 YfmG RVT-DGRs Avd_like Feature: gene Location: 641-1033 bp Feature: gene Location: 1059-3590 bp Feature: domain Description: NACHT Location: 1392-1458 bp Feature: domain Description: NACHT Location: 13 92-1458 bp Feature: domain Description: COG5635 Location: 1704-2526 bp Feature: domain Description: COG563 5 Location: 1704-2526 bp Feature: domain Description: YfmG Location: 2841-3579 bp Feature: domain Description: YfmG Location: 2841-3 579 bp Feature: gene Location: 3759-4487 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3957-4485 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 957-4485 bp Feature: gene Location: 4488-4826 bp Feature: gene Location: 4823-5032 bp Feature: domain Description: Avd_like Location: 4844-5027 bp Feature: domain Description: Avd_like Location: 4844-5027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NACHT (pfam05729), COG5635 (Predicted NTPase, NACHT family domain ), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: JAACEJ010000086.1 Actinobacteria bacterium isolate OTbin.62 scaffold_3255, whole genome shotgun sequence (9537 bp)
Overview 1 RT 1: 858-5455 bp Neighborhood of RT #1 [858, 5463] Zn_Tnp_IS1595 DDE_Tnp_IS1595 RVT-DGRs DUF4062 COG5635 YfmG Feature: gene Location: 858-995 bp Feature: gene Location: 767-1675 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 815-947 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 815-94 7 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 1157-1586 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 1157-1586 bp Feature: gene Location: 1755-2363 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1758-2124 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1758-2124 bp Feature: gene Location: 2411-3349 bp Feature: domain Description: DUF4062 Location: 2444-2702 bp Feature: domain Description: DUF4 062 Location: 24 4 4 -2702 bp Feature: gene Location: 3304-5463 bp Feature: domain Description: COG5635 Location: 3541-4282 bp Feature: domain Description: COG5635 Location: 354 1-4 282 bp Feature: domain Description: YfmG Location: 4633-5455 bp Feature: domain Description: YfmG Location: 4 633-54 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS1595 (pfam12760), DDE_Tnp_IS1595 (pfam12762), RVT-DGRs, DUF4062 (pfam13271), COG5635 (Predicted NTPase, NACHT family domain ), YfmG (COG1262)