myRT

myRT report for GCA_011682995.1_ASM1168299v1

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Seq: VCOX01000001.1 Pseudomonas aeruginosa strain CPa40 Scaffold1, whole genome shotgun sequence (920536 bp)
Overview 1 RT 1: 821716-832024 bp 2 RT 2: 848282-857123 bp Neighborhood of RT #1 [821716, 832026] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [848282, 857152] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 821716-822837 bp Feature: domain Description: COG3177 Location: 821734-822826 bp Feature: domain Description: COG31 77 Location: 821 734-822826 bp Feature: gene Location: 823099-823260 bp Feature: gene Location: 823563-825248 bp Feature: RT Description: RVT_N Location: 823620-823860 bp Feature: RT Description: RVT_N Location: 823620-823860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823908-824544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823908-824544 bp Feature: domain Description: GIIM Note: maturase Location: 824598-824829 bp Feature: domain Description: GIIM Note: maturase Location: 824598-824829 bp Feature: domain Description: HNH Note: nucleases Location: 825081-825219 bp Feature: domain Description: HNH Note: nucleases Location: 825081 -82521 9 bp Feature: gene Location: 826329-830066 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 826437-827094 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 826437-827094 bp Feature: domain Description: PRK09776 Location: 827307-827778 bp Feature: domain Description: PRK09776 Location: 827307-827778 bp Feature: domain Description: PAS Location: 827829-828360 bp Feature: domain Description: PAS Location: 827829-828360 bp Feature: domain Description: PRK10060 Location: 828369-830016 bp Feature: domain Description: PRK1 0060 Location: 828369-83001 6 bp Feature: gene Location: 830173-832026 bp Feature: domain Description: PRK05658 Location: 830185-832024 bp Feature: domain Description: PRK05658 Location: 8301 85-832024 bp Feature: gene Location: 848282-849496 bp Feature: domain Description: PRK10770 Location: 848294-849488 bp Feature: domain Description: PRK1 0770 Location: 848294-849488 bp Feature: gene Location: 849555-852347 bp Feature: domain Description: LptD Location: 849750-852333 bp Feature: domain Description: LptD Location: 849750-852333 bp Feature: gene Location: 852480-854192 bp Feature: RT Description: RVT_N Location: 852537-852780 bp Feature: RT Description: RVT_N Location: 852537-852780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852825-853461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852825-853461 bp Feature: domain Description: YkfC Location: 853668-853821 bp Feature: domain Description: YkfC Location: 853668-853821 bp Feature: domain Description: HNH Note: nucleases Location: 853998-854136 bp Feature: domain Description: HNH Note: nucleases Location: 853998-8541 36 bp Feature: gene Location: 855465-856481 bp Feature: domain Description: COG3178 Location: 855468-856467 bp Feature: domain Description: COG31 78 Location: 855468-856467 bp Feature: gene Location: 856478-857152 bp Feature: domain Description: NTP_transferase_like_1 Location: 856484-857123 bp Feature: domain Description: NTP_transferase_like_1 Location: 856484-8571 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: VCOX01000005.1 Pseudomonas aeruginosa strain CPa40 Scaffold5, whole genome shotgun sequence (492634 bp)
Overview 1 RT 1: 340033-345892 bp Neighborhood of RT #1 [340033, 345892] conj_PilL KOG0389 SF2_C_SNF RVT_N RVT-GII YkfC HNHc DEXHc_Snf Feature: gene Location: 340033-340557 bp Feature: domain Description: conj_PilL Location: 340141-340450 bp Feature: domain Description: conj_PilL Location: 340141-340450 bp Feature: gene Location: 340771-342138 bp Feature: domain Description: KOG0389 Location: 340903-341032 bp Feature: domain Description: KOG0389 Location: 340903-341032 bp Feature: domain Description: SF2_C_SNF Location: 341578-341974 bp Feature: domain Description: SF2 _C_SNF Location: 341578-341974 bp Feature: gene Location: 342233-343738 bp Feature: RT Description: RVT_N Location: 342236-342338 bp Feature: RT Description: RVT_N Location: 342 2 36-342 338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342383-343025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 383-34302 5 bp Feature: domain Description: YkfC Location: 343025-343334 bp Feature: domain Description: YkfC Location: 34302 5-343334 bp Feature: domain Description: HNHc Note: nucleases Location: 343529-343691 bp Feature: domain Description: HNHc Note: nucleases Location: 34352 9-343691 bp Feature: gene Location: 344530-345450 bp Feature: domain Description: DEXHc_Snf Location: 344749-345004 bp Feature: domain Description: DEXHc_Snf Location: 344749-345004 bp Feature: gene Location: 345587-345892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_PilL (TIGR03748), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DEXHc_Snf (cd17919)