myRT

myRT report for GCA_011683035.1_ASM1168303v1

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Seq: VCOW01000001.1 Pseudomonas aeruginosa strain NSPa40 Scaffold1, whole genome shotgun sequence (920528 bp)
Overview 1 RT 1: 63377-72239 bp 2 RT 2: 88503-98802 bp Neighborhood of RT #1 [63377, 72247] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88503, 98813] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 63377-64051 bp Feature: domain Description: NTP_transferase_like_1 Location: 63383-64022 bp Feature: domain Description: NTP_transferase_like_1 Location: 63383-64022 bp Feature: gene Location: 64048-65064 bp Feature: domain Description: COG3178 Location: 64051-65050 bp Feature: domain Description: COG31 78 Location: 64051 -65050 bp Feature: gene Location: 66337-68049 bp Feature: RT Description: RVT_N Location: 66394-66637 bp Feature: RT Description: RVT_N Location: 66394-66637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66682-67318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66682-6731 8 bp Feature: domain Description: YkfC Location: 67525-67678 bp Feature: domain Description: YkfC Location: 67525-67678 bp Feature: domain Description: HNH Note: nucleases Location: 67855-67993 bp Feature: domain Description: HNH Note: nucleases Location: 67855-67993 bp Feature: gene Location: 68182-70974 bp Feature: domain Description: LptD Location: 68377-70960 bp Feature: domain Description: LptD Location: 68377-70960 bp Feature: gene Location: 71033-72247 bp Feature: domain Description: PRK10770 Location: 71045-72239 bp Feature: domain Description: PRK1 0770 Location: 71 045-72239 bp Feature: gene Location: 88503-90356 bp Feature: domain Description: PRK05658 Location: 88515-90354 bp Feature: domain Description: PRK05658 Location: 8851 5-90354 bp Feature: gene Location: 90463-94200 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90571-91228 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90571 -91 228 bp Feature: domain Description: PRK09776 Location: 91441-91912 bp Feature: domain Description: PRK09776 Location: 91 441 -91 91 2 bp Feature: domain Description: PAS Location: 91963-92494 bp Feature: domain Description: PAS Location: 91 963-92494 bp Feature: domain Description: PRK10060 Location: 92503-94150 bp Feature: domain Description: PRK1 0060 Location: 92503-941 50 bp Feature: gene Location: 95281-96966 bp Feature: RT Description: RVT_N Location: 95338-95578 bp Feature: RT Description: RVT_N Location: 95338-95578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95626-96262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95626-96262 bp Feature: domain Description: GIIM Note: maturase Location: 96316-96547 bp Feature: domain Description: GIIM Note: maturase Location: 9631 6-96547 bp Feature: domain Description: HNH Note: nucleases Location: 96799-96937 bp Feature: domain Description: HNH Note: nucleases Location: 96799-96937 bp Feature: gene Location: 97269-97430 bp Feature: gene Location: 97692-98813 bp Feature: domain Description: COG3177 Location: 97710-98802 bp Feature: domain Description: COG31 77 Location: 9771 0-98802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: VCOW01000005.1 Pseudomonas aeruginosa strain NSPa40 Scaffold5, whole genome shotgun sequence (492634 bp)
Overview 1 RT 1: 340033-345892 bp Neighborhood of RT #1 [340033, 345892] conj_PilL KOG0389 SF2_C_SNF RVT_N RVT-GII YkfC HNHc DEXHc_Snf Feature: gene Location: 340033-340557 bp Feature: domain Description: conj_PilL Location: 340141-340450 bp Feature: domain Description: conj_PilL Location: 340141-340450 bp Feature: gene Location: 340771-342138 bp Feature: domain Description: KOG0389 Location: 340903-341032 bp Feature: domain Description: KOG0389 Location: 340903-341032 bp Feature: domain Description: SF2_C_SNF Location: 341578-341974 bp Feature: domain Description: SF2 _C_SNF Location: 341578-341974 bp Feature: gene Location: 342233-343738 bp Feature: RT Description: RVT_N Location: 342236-342338 bp Feature: RT Description: RVT_N Location: 342 2 36-342 338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342383-343025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 383-34302 5 bp Feature: domain Description: YkfC Location: 343025-343334 bp Feature: domain Description: YkfC Location: 34302 5-343334 bp Feature: domain Description: HNHc Note: nucleases Location: 343529-343691 bp Feature: domain Description: HNHc Note: nucleases Location: 34352 9-343691 bp Feature: gene Location: 344530-345450 bp Feature: domain Description: DEXHc_Snf Location: 344749-345004 bp Feature: domain Description: DEXHc_Snf Location: 344749-345004 bp Feature: gene Location: 345587-345892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_PilL (TIGR03748), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DEXHc_Snf (cd17919)