myRT

myRT report for GCA_011714685.1_ASM1171468v1

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Seq: RXXJ01000012.1 Streptococcus pseudopneumoniae strain CCUG 72029 NODE_12_length_66234_cov_390.480372, whole genome shotgun sequence (66234 bp)
Overview 1 RT 1: 30285-38047 bp Neighborhood of RT #1 [30285, 38094] eno RVT-GII RVT-GII GIIM INT_ICEBs1_C_like rexB_recomb Feature: gene Location: 30285-30416 bp Feature: gene Location: 30578-31882 bp Feature: domain Description: eno Location: 30581-31874 bp Feature: domain Description: eno Location: 30581 -31 874 bp Feature: gene Location: 32727-33029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32931-33018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32931 -3301 8 bp Feature: gene Location: 33046-33918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33049-33460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33049-33460 bp Feature: domain Description: GIIM Note: maturase Location: 33514-33727 bp Feature: domain Description: GIIM Note: maturase Location: 3351 4-33727 bp Feature: gene Location: 34002-34250 bp Feature: domain Description: INT_ICEBs1_C_like Location: 34020-34185 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 34020-341 85 bp Feature: gene Location: 34795-38094 bp Feature: domain Description: rexB_recomb Location: 34825-38047 bp Feature: domain Description: rexB_recomb Location: 34825-38047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT eno (TIGR01060), RVT-GII, GIIM (pfam08388), INT_ICEBs1_C_like (cd01189), rexB_recomb (TIGR02774)

Seq: RXXJ01000013.1 Streptococcus pseudopneumoniae strain CCUG 72029 NODE_13_length_61943_cov_614.260353, whole genome shotgun sequence (61943 bp)
Overview 1 RT 1: 52316-57044 bp Neighborhood of RT #1 [52316, 57049] COG4466 COG3942 CW_binding_1 CW_binding_1 CW_binding_1 CW_binding_1 RVT-GII RVT-GII GIIM YqgV TauC Feature: gene Location: 52316-52582 bp Feature: domain Description: COG4466 Location: 52331-52580 bp Feature: domain Description: COG4466 Location: 52 331-52 580 bp Feature: gene Location: 52671-53789 bp Feature: domain Description: COG3942 Location: 52677-53325 bp Feature: domain Description: COG3942 Location: 52 677-5332 5 bp Feature: domain Description: CW_binding_1 Location: 53502-53550 bp Feature: domain Description: CW_binding_1 Location: 53502 -53550 bp Feature: domain Description: CW_binding_1 Location: 53559-53613 bp Feature: domain Description: CW_binding_1 Location: 53559-53613 bp Feature: domain Description: CW_binding_1 Location: 53619-53673 bp Feature: domain Description: CW_binding_1 Location: 53619-53673 bp Feature: domain Description: CW_binding_1 Location: 53679-53730 bp Feature: domain Description: CW_binding_1 Location: 53679-53730 bp Feature: gene Location: 54564-54866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54768-54855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54768-54855 bp Feature: gene Location: 54883-55743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54886-55297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54886-552 97 bp Feature: domain Description: GIIM Note: maturase Location: 55351-55564 bp Feature: domain Description: GIIM Note: maturase Location: 55351-55564 bp Feature: gene Location: 55987-56328 bp Feature: domain Description: YqgV Location: 56041-56323 bp Feature: domain Description: YqgV Location: 56041-5632 3 bp Feature: gene Location: 56309-57049 bp Feature: domain Description: TauC Location: 56321-57044 bp Feature: domain Description: TauC Location: 5632 1-57044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4466 (Uncharacterized protein Veg, DUF1021 family ), COG3942 (Surface antigen ), CW_binding_1 (pfam01473), RVT-GII, GIIM (pfam08388), YqgV (COG0011), TauC (COG0600)

Seq: RXXJ01000019.1 Streptococcus pseudopneumoniae strain CCUG 72029 NODE_19_length_39393_cov_443.311603, whole genome shotgun sequence (39393 bp)
Overview 1 RT 1: 10688-14444 bp Neighborhood of RT #1 [10688, 14761] SR_TndX_transposase PRK00106 RVT-GII RVT-GII HTH_29 Feature: gene Location: 10688-10903 bp Feature: domain Description: SR_TndX_transposase Location: 10691-10862 bp Feature: domain Description: SR_TndX_transposase Location: 10691-10862 bp Feature: gene Location: 10955-12568 bp Feature: domain Description: PRK00106 Location: 10964-12566 bp Feature: domain Description: PRK00106 Location: 10964-12566 bp Feature: gene Location: 13271-13573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13475-13562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 475-13 562 bp Feature: gene Location: 13590-13952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13593-13950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 593 -13 950 bp Feature: gene Location: 14042-14227 bp Feature: gene Location: 14228-14761 bp Feature: domain Description: HTH_29 Location: 14273-14444 bp Feature: domain Description: HTH_29 Location: 14273 -14444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), PRK00106 (ribonuclease Y), RVT-GII, HTH_29 (pfam13551)