myRT

myRT report for GCA_011714925.1_ASM1171492v1

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Seq: RXXU01000011.1 Streptococcus pseudopneumoniae strain CCUG 50871 NODE_11_length_61611_cov_316.816719, whole genome shotgun sequence (61611 bp)
Overview 1 RT 1: 51654-56383 bp Neighborhood of RT #1 [51654, 56388] COG4466 COG3942 CW_binding_1 CW_binding_1 CW_binding_1 CW_binding_1 RVT-GII RVT-GII GIIM YqgV TauC Feature: gene Location: 51654-51920 bp Feature: domain Description: COG4466 Location: 51669-51918 bp Feature: domain Description: COG4466 Location: 51 669-51 91 8 bp Feature: gene Location: 52009-53127 bp Feature: domain Description: COG3942 Location: 52015-52663 bp Feature: domain Description: COG3942 Location: 5201 5-52663 bp Feature: domain Description: CW_binding_1 Location: 52840-52888 bp Feature: domain Description: CW_binding_1 Location: 52840-52888 bp Feature: domain Description: CW_binding_1 Location: 52897-52951 bp Feature: domain Description: CW_binding_1 Location: 52897-52951 bp Feature: domain Description: CW_binding_1 Location: 52957-53011 bp Feature: domain Description: CW_binding_1 Location: 52957-5301 1 bp Feature: domain Description: CW_binding_1 Location: 53017-53068 bp Feature: domain Description: CW_binding_1 Location: 5301 7-53068 bp Feature: gene Location: 53902-54204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54106-54193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 06-541 93 bp Feature: gene Location: 54221-55081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54224-54635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54224-54635 bp Feature: domain Description: GIIM Note: maturase Location: 54689-54902 bp Feature: domain Description: GIIM Note: maturase Location: 54689-54902 bp Feature: gene Location: 55377-55667 bp Feature: domain Description: YqgV Location: 55380-55662 bp Feature: domain Description: YqgV Location: 55380-55662 bp Feature: gene Location: 55627-56388 bp Feature: domain Description: TauC Location: 55636-56383 bp Feature: domain Description: TauC Location: 55636-56383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4466 (Uncharacterized protein Veg, DUF1021 family ), COG3942 (Surface antigen ), CW_binding_1 (pfam01473), RVT-GII, GIIM (pfam08388), YqgV (COG0011), TauC (COG0600)

Seq: RXXU01000035.1 Streptococcus pseudopneumoniae strain CCUG 50871 NODE_35_length_20919_cov_248.342290, whole genome shotgun sequence (20919 bp)
Overview 1 RT 1: 1770-9103 bp Neighborhood of RT #1 [1770, 9150] eno RVT-GII GIIM INT_ICEBs1_C_like rexB_recomb Feature: gene Location: 1770-3074 bp Feature: domain Description: eno Location: 1773-3066 bp Feature: domain Description: eno Location: 1773-3066 bp Feature: gene Location: 3081-3260 bp Feature: gene Location: 3696-4973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3900-4515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3900-4515 bp Feature: domain Description: GIIM Note: maturase Location: 4569-4782 bp Feature: domain Description: GIIM Note: maturase Location: 4569-4782 bp Feature: gene Location: 5057-5305 bp Feature: domain Description: INT_ICEBs1_C_like Location: 5075-5240 bp Feature: domain Description: INT_ICEBs1_C_like Location: 5075-52 40 bp Feature: gene Location: 5851-9150 bp Feature: domain Description: rexB_recomb Location: 5881-9103 bp Feature: domain Description: rexB_recomb Location: 5881-9103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT eno (TIGR01060), RVT-GII, GIIM (pfam08388), INT_ICEBs1_C_like (cd01189), rexB_recomb (TIGR02774)