myRT

myRT report for GCA_011751075.1_ASM1175107v1

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Seq: JAALLN010000001.1 Flavobacterium sp. JXAS1 L12_scaffold1, whole genome shotgun sequence (1214728 bp)
Overview 1 RT 1: 359411-364926 bp 2 RT 2: 442866-452055 bp Neighborhood of RT #1 [359411, 365387] DUF4133 Bac_Flav_CT_G RVT-GII group_II_RT_mat HNHc Bac_Flav_CT_G DUF4141 Neighborhood of RT #2 [442866, 452240] HsdM RMtype1_S_StySKI-TRD2-CR2_like RMtype1_S_StySKI-TRD2-CR2_like RVT-UG5 PRK11331 PRK11331 McrBC Feature: gene Location: 359411-359740 bp Feature: domain Description: DUF4133 Location: 359426-359693 bp Feature: domain Description: DUF41 33 Location: 359426-359693 bp Feature: gene Location: 359737-361827 bp Feature: domain Description: Bac_Flav_CT_G Location: 359740-361816 bp Feature: domain Description: Bac_Flav_CT_G Location: 359740-361 81 6 bp Feature: gene Location: 362372-364183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362636-363458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362636-363458 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 363668-363788 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 363668-363788 bp Feature: domain Description: HNHc Note: nucleases Location: 364001-364157 bp Feature: domain Description: HNHc Note: nucleases Location: 364001 -3641 57 bp Feature: gene Location: 364243-364728 bp Feature: domain Description: Bac_Flav_CT_G Location: 364264-364702 bp Feature: domain Description: Bac_Flav_CT_G Location: 364264-364702 bp Feature: gene Location: 364755-365387 bp Feature: domain Description: DUF4141 Location: 364770-364926 bp Feature: domain Description: DUF41 41 Location: 364770-364926 bp Feature: gene Location: 442866-444488 bp Feature: domain Description: HsdM Location: 442902-444468 bp Feature: domain Description: HsdM Location: 442902-444468 bp Feature: gene Location: 444475-445803 bp Feature: domain Description: RMtype1_S_StySKI-TRD2-CR2_like Location: 444481-445024 bp Feature: domain Description: RMtype1 _S_StySKI-TRD2-CR2_like Location: 444481 -445024 bp Feature: domain Description: RMtype1_S_StySKI-TRD2-CR2_like Location: 445414-445702 bp Feature: domain Description: RMtype1 _S_StySKI-TRD2-CR2_like Location: 44541 4-445702 bp Feature: gene Location: 445806-448781 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 446307-446805 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 446307-446805 bp Feature: gene Location: 448867-450864 bp Feature: domain Description: PRK11331 Location: 449686-449896 bp Feature: domain Description: PRK1 1 331 Location: 449686-449896 bp Feature: domain Description: PRK11331 Location: 450310-450793 bp Feature: domain Description: PRK1 1 331 Location: 45031 0-450793 bp Feature: gene Location: 450864-452240 bp Feature: domain Description: McrBC Location: 451299-452055 bp Feature: domain Description: McrBC Location: 451 299-452055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, group_II_RT_mat (TIGR04416), HNHc (smart00507), DUF4141 (pfam13605), HsdM (COG0286), RMtype1_S_StySKI-TRD2-CR2_like (cd17259), RVT-UG5, PRK11331 (5-methylcytosine-specific restriction enzyme subunit McrB; Provisional)
McrBC (pfam10117)

Seq: JAALLN010000016.1 Flavobacterium sp. JXAS1 L12_scaffold16, whole genome shotgun sequence (110874 bp)
Overview 1 RT 1: 19524-26255 bp Neighborhood of RT #1 [19524, 26255] HTH_XRE RVT-UG8 RVT-UG3 PinE Feature: gene Location: 19524-19760 bp Feature: domain Description: HTH_XRE Location: 19569-19728 bp Feature: domain Description: HTH_XRE Location: 19569-1972 8 bp Feature: gene Location: 19903-20481 bp Feature: gene Location: 20682-23012 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 21219-21684 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 12 19-2 1684 bp Feature: gene Location: 23015-24520 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 23489-24029 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 3489-2 402 9 bp Feature: gene Location: 24955-25551 bp Feature: domain Description: PinE Location: 24958-25528 bp Feature: domain Description: PinE Location: 2 4958-2 552 8 bp Feature: gene Location: 25566-26255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-UG8, RVT-UG3, PinE (COG1961)

Seq: JAALLN010000042.1 Flavobacterium sp. JXAS1 L12_scaffold42, whole genome shotgun sequence (1520 bp)
Overview 1 RT 1: 79-1191 bp Neighborhood of RT #1 [79, 1496] RVT-UNC Feature: gene Location: 79-450 bp Feature: gene Location: 576-1496 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 645-1191 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 645-1191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)