myRT

myRT report for GCA_011751375.1_ASM1175137v1

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Seq: JAAJTU010000001.1 Escherichia coli strain UMB150101_13 scaffold00001, whole genome shotgun sequence (4775135 bp)
Overview 1 RT 1: 4036657-4040566 bp Neighborhood of RT #1 [4036657, 4040577] PHA02517 RVT-GII GIIM PHA02517 PRK14702 Feature: gene Location: 4036657-4036830 bp Feature: gene Location: 4036832-4037095 bp Feature: domain Description: PHA02517 Location: 4036835-4037030 bp Feature: domain Description: PHA0251 7 Location: 4036835-4037030 bp Feature: gene Location: 4037687-4039210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4037960-4038692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4037960-4038692 bp Feature: domain Description: GIIM Note: maturase Location: 4038767-4038965 bp Feature: domain Description: GIIM Note: maturase Location: 4038767-4038965 bp Feature: gene Location: 4039339-4039779 bp Feature: domain Description: PHA02517 Location: 4039342-4039747 bp Feature: domain Description: PHA0251 7 Location: 4039342-4039747 bp Feature: gene Location: 4040392-4040577 bp Feature: domain Description: PRK14702 Location: 4040395-4040566 bp Feature: domain Description: PRK1 4702 Location: 4040395-4040566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK14702 (insertion element IS2 transposase InsD; Provisional)

Seq: JAAJTU010000002.1 Escherichia coli strain UMB150101_13 scaffold00002, whole genome shotgun sequence (148490 bp)
Overview 1 RT 1: 5521-8870 bp 2 RT 2: 22232-26410 bp 3 RT 3: 45863-49913 bp 4 RT 4: 130650-134874 bp Neighborhood of RT #1 [5521, 8935] PRK09413 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [22232, 26415] InsE PHA02517 RVT-GII GIIM Tra5 InsE Neighborhood of RT #3 [45863, 49966] InsE PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Neighborhood of RT #4 [130650, 134874] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 5521-5886 bp Feature: domain Description: PRK09413 Location: 5524-5884 bp Feature: domain Description: PRK09413 Location: 552 4-5884 bp Feature: gene Location: 5976-6422 bp Feature: domain Description: PHA02517 Location: 5979-6420 bp Feature: domain Description: PHA02 517 Location: 5979-642 0 bp Feature: gene Location: 6539-8062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6812-7544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6812 -7544 bp Feature: domain Description: GIIM Note: maturase Location: 7622-7817 bp Feature: domain Description: GIIM Note: maturase Location: 762 2 -7817 bp Feature: gene Location: 8016-8441 bp Feature: gene Location: 8654-8935 bp Feature: domain Description: PHA02517 Location: 8660-8870 bp Feature: domain Description: PHA02 517 Location: 8660-8870 bp Feature: gene Location: 22232-22558 bp Feature: domain Description: InsE Location: 22235-22556 bp Feature: domain Description: InsE Location: 2 2 2 35-2 2 556 bp Feature: gene Location: 22558-23037 bp Feature: domain Description: PHA02517 Location: 22618-22972 bp Feature: domain Description: PHA02 517 Location: 2 2 618-2 2 972 bp Feature: gene Location: 23629-25152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23902-24634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3902 -2 4634 bp Feature: domain Description: GIIM Note: maturase Location: 24712-24907 bp Feature: domain Description: GIIM Note: maturase Location: 2 4712 -2 4907 bp Feature: gene Location: 25472-26119 bp Feature: domain Description: Tra5 Location: 25583-26093 bp Feature: domain Description: Tra5 Location: 2 5583-2 6093 bp Feature: gene Location: 26116-26415 bp Feature: domain Description: InsE Location: 26143-26410 bp Feature: domain Description: InsE Location: 2 6143-2 6410 bp Feature: gene Location: 45863-46189 bp Feature: domain Description: InsE Location: 45866-46187 bp Feature: domain Description: InsE Location: 45866-46187 bp Feature: gene Location: 46387-46668 bp Feature: domain Description: PHA02517 Location: 46393-46603 bp Feature: domain Description: PHA02 517 Location: 46393-46603 bp Feature: gene Location: 47260-48783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47533-48265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47533-482 65 bp Feature: domain Description: GIIM Note: maturase Location: 48340-48538 bp Feature: domain Description: GIIM Note: maturase Location: 48340-48538 bp Feature: gene Location: 48960-49346 bp Feature: domain Description: PHA02517 Location: 48963-49344 bp Feature: domain Description: PHA02 517 Location: 48963-49344 bp Feature: gene Location: 49349-49966 bp Feature: domain Description: autotrans_barl Location: 49472-49913 bp Feature: domain Description: autotrans_barl Location: 49472 -49913 bp Feature: gene Location: 130650-130883 bp Feature: domain Description: DUF905 Location: 130680-130878 bp Feature: domain Description: DUF905 Location: 130680-130878 bp Feature: gene Location: 130941-131381 bp Feature: domain Description: PRK13732 Location: 130947-131379 bp Feature: domain Description: PRK13732 Location: 130947-131379 bp Feature: gene Location: 131576-133477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131843-132674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131843-132 674 bp Feature: domain Description: Intron_maturas2 Location: 132788-133046 bp Feature: domain Description: Intron_maturas2 Location: 132 788-133046 bp Feature: domain Description: HNHc Note: nucleases Location: 133220-133382 bp Feature: domain Description: HNHc Note: nucleases Location: 1332 2 0-133382 bp Feature: gene Location: 134194-134430 bp Feature: gene Location: 134431-134874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), Tra5 (COG2801), autotrans_barl (TIGR01414), DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348)
HNHc (smart00507)