myRT

myRT report for GCA_011759515.1_ASM1175951v1

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Seq: JAAOYP010000001.1 Micromonospora sp. CNZ280 Ga0193636_01, whole genome shotgun sequence (3097753 bp)
Overview 1 RT 1: 2674076-2679110 bp Neighborhood of RT #1 [2674076, 2679110] PadR RHS_repeat RHS_repeat RHS_repeat RHS_repeat RVT-GII Acetyltransf_1 Feature: gene Location: 2674076-2674597 bp Feature: domain Description: PadR Location: 2674079-2674340 bp Feature: domain Description: PadR Location: 2674079-2674340 bp Feature: gene Location: 2674774-2675709 bp Feature: domain Description: RHS_repeat Location: 2674804-2674867 bp Feature: domain Description: RHS_repeat Location: 2674804-2674867 bp Feature: domain Description: RHS_repeat Location: 2674957-2675065 bp Feature: domain Description: RHS_repeat Location: 2674957-2675065 bp Feature: domain Description: RHS_repeat Location: 2675155-2675242 bp Feature: domain Description: RHS_repeat Location: 26751 55-2675242 bp Feature: domain Description: RHS_repeat Location: 2675440-2675506 bp Feature: domain Description: RHS_repeat Location: 2675440-2675506 bp Feature: gene Location: 2676760-2677359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2677015-2677342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267701 5-2677342 bp Feature: gene Location: 2677844-2678338 bp Feature: domain Description: Acetyltransf_1 Location: 2677970-2678258 bp Feature: domain Description: Acetyltransf_1 Location: 2677970-2678258 bp Feature: gene Location: 2678535-2679110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PadR (pfam03551), RHS_repeat (pfam05593), RVT-GII, Acetyltransf_1 (pfam00583)

Seq: JAAOYP010000002.1 Micromonospora sp. CNZ280 Ga0193636_02, whole genome shotgun sequence (1512156 bp)
Overview 1 RT 1: 1029570-1035716 bp Neighborhood of RT #1 [1029570, 1035838] TIGR03083 RVT-GII GIIM Ndh Ndh Feature: gene Location: 1029570-1029842 bp Feature: gene Location: 1030445-1031245 bp Feature: domain Description: TIGR03083 Location: 1030487-1031162 bp Feature: domain Description: TIGR03083 Location: 1030487-1031162 bp Feature: gene Location: 1031529-1032845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1031784-1032414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1031784-1032 414 bp Feature: domain Description: GIIM Note: maturase Location: 1032501-1032717 bp Feature: domain Description: GIIM Note: maturase Location: 1032 501-1032 717 bp Feature: gene Location: 1033868-1034395 bp Feature: domain Description: Ndh Location: 1033871-1034132 bp Feature: domain Description: Ndh Location: 1033871-1034132 bp Feature: gene Location: 1034648-1035838 bp Feature: domain Description: Ndh Location: 1034660-1035716 bp Feature: domain Description: Ndh Location: 1034660-1035716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03083 (uncharacterized Actinobacterial protein TIGR03083), RVT-GII, GIIM (pfam08388), Ndh (COG1252)

Seq: JAAOYP010000004.1 Micromonospora sp. CNZ280 Ga0193636_04, whole genome shotgun sequence (766838 bp)
Overview 1 RT 1: 566286-572013 bp 2 RT 2: 655137-660144 bp Neighborhood of RT #1 [566286, 572013] RVT-Retrons Neighborhood of RT #2 [655137, 660185] COG4584 DUF4096 COG3293 RVT-GII OYE_like_5_FMN TMR_SDR_a Feature: gene Location: 566286-567131 bp Feature: gene Location: 567273-567551 bp Feature: gene Location: 567977-569275 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 568421-569039 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 568421-56903 9 bp Feature: gene Location: 570046-570219 bp Feature: gene Location: 570325-572013 bp Feature: gene Location: 655137-656564 bp Feature: domain Description: COG4584 Location: 655179-656019 bp Feature: domain Description: COG4584 Location: 655179-656019 bp Feature: gene Location: 656613-657509 bp Feature: domain Description: DUF4096 Location: 656634-656850 bp Feature: domain Description: DUF4096 Location: 65663 4-656850 bp Feature: domain Description: COG3293 Location: 657066-657489 bp Feature: domain Description: COG3 293 Location: 657066-657489 bp Feature: gene Location: 657755-658054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 657761-657887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 657761-657887 bp Feature: gene Location: 658172-659293 bp Feature: domain Description: OYE_like_5_FMN Location: 658208-659288 bp Feature: domain Description: OYE_like_5_FMN Location: 658208-659288 bp Feature: gene Location: 659340-660185 bp Feature: domain Description: TMR_SDR_a Location: 659361-660144 bp Feature: domain Description: TMR_SDR_a Location: 6593 61-660144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG4584 (Transposase ), DUF4096 (pfam13340), COG3293 (Transposase ), RVT-GII, OYE_like_5_FMN (cd04747), TMR_SDR_a (cd05269)