myRT

myRT report for GCA_011764425.1_ASM1176442v1

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Seq: BLPF01000001.1 Phytohabitans houttuyneae NBRC 108639 DNA, sequence1, whole genome shotgun sequence (5156269 bp)
Overview 1 RT 1: 1513926-1518345 bp Neighborhood of RT #1 [1513926, 1518345] IstB_IS21 HTH_Tnp_4 DDE_Tnp_4 RVT-GII GIIM PRK08181 Feature: gene Location: 1513926-1514309 bp Feature: domain Description: IstB_IS21 Location: 1513932-1514229 bp Feature: domain Description: IstB_IS21 Location: 1 51 3932-1 51 4229 bp Feature: gene Location: 1514451-1515104 bp Feature: domain Description: HTH_Tnp_4 Location: 1514454-1514574 bp Feature: domain Description: HTH_Tnp_4 Location: 1 51 4454-1 51 4574 bp Feature: domain Description: DDE_Tnp_4 Location: 1514628-1515072 bp Feature: domain Description: DDE_Tnp_4 Location: 1 51 4628-1 51 5072 bp Feature: gene Location: 1515519-1516589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1515528-1516158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 5528-1 51 61 58 bp Feature: domain Description: GIIM Note: maturase Location: 1516245-1516458 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 6245-1 51 6458 bp Feature: gene Location: 1517451-1517759 bp Feature: domain Description: PRK08181 Location: 1517499-1517718 bp Feature: domain Description: PRK081 81 Location: 1 51 7499-1 51 771 8 bp Feature: gene Location: 1517866-1518345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), RVT-GII, GIIM (pfam08388), PRK08181 (transposase; Validated)

Seq: BLPF01000004.1 Phytohabitans houttuyneae NBRC 108639 DNA, sequence4, whole genome shotgun sequence (1494550 bp)
Overview 1 RT 1: 229092-232214 bp 2 RT 2: 249901-260435 bp Neighborhood of RT #1 [229092, 232214] PTPS NrdG RVT-CRISPR-like pfam03781 Neighborhood of RT #2 [249901, 260707] RVT-Retrons hsdR WD40 WD40 WD40 Feature: gene Location: 229092-229469 bp Feature: domain Description: PTPS Location: 229104-229455 bp Feature: domain Description: PTPS Location: 2 2 9104-2 2 9455 bp Feature: gene Location: 229466-230182 bp Feature: domain Description: NrdG Location: 229502-230165 bp Feature: domain Description: NrdG Location: 2 2 9502 -2 30165 bp Feature: gene Location: 230241-231131 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 230562-231084 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 30562 -2 31084 bp Feature: gene Location: 231148-231720 bp Feature: domain Description: pfam03781 Location: 231274-231709 bp Feature: domain Description: pfam03781 Location: 2 312 74-2 31709 bp Feature: gene Location: 232059-232214 bp Feature: gene Location: 249901-251043 bp Feature: gene Location: 252355-252837 bp Feature: gene Location: 252975-254204 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 253200-253839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 532 00-2 53839 bp Feature: gene Location: 254362-255447 bp Feature: gene Location: 256652-260707 bp Feature: domain Description: hsdR Location: 256688-257162 bp Feature: domain Description: hsdR Location: 2 56688-2 57162 bp Feature: domain Description: WD40 Location: 258812-259292 bp Feature: domain Description: WD40 Location: 2 58812 -2 592 92 bp Feature: domain Description: WD40 Location: 259361-259715 bp Feature: domain Description: WD40 Location: 2 59361-2 59715 bp Feature: domain Description: WD40 Location: 259736-260435 bp Feature: domain Description: WD40 Location: 2 59736-2 60435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTPS (pfam01242), NrdG (TIGR02491), RVT-CRISPR, pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-Retrons, hsdR (TIGR00348), WD40 (smart00320)