myRT

myRT report for GCA_011773025.1_ASM1177302v1

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Seq: WVYK01000372.1 Anaerolineae bacterium isolate CS2-C105 C_merged_R1_(paired)_contig_138143, whole genome shotgun sequence (4045 bp)
Overview 1 RT 1: 753-3462 bp Neighborhood of RT #1 [753, 3462] RVT-Retrons Feature: gene Location: 753-989 bp Feature: gene Location: 1122-1343 bp Feature: gene Location: 1395-2378 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1569-2118 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 569-21 1 8 bp Feature: gene Location: 2466-2747 bp Feature: gene Location: 2740-3462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: WVYK01000993.1 Anaerolineae bacterium isolate CS2-C105 C_merged_R1_(paired)_contig_161506, whole genome shotgun sequence (1388 bp)
Overview 1 RT 1: 2-1387 bp Neighborhood of RT #1 [2, 1387] RVT-GII Feature: gene Location: 2-559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-449 bp Feature: gene Location: 643-1044 bp Feature: gene Location: 1250-1387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WVYK01000855.1 Anaerolineae bacterium isolate CS2-C105 C_merged_R1_(paired)_contig_25872, whole genome shotgun sequence (2479 bp)
Overview 1 RT 1: 119-1682 bp Neighborhood of RT #1 [119, 1699] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 119-1699 bp Feature: domain Description: RVT_N Location: 125-332 bp Feature: domain Description: RVT_N Location: 125-3 3 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380-1022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 80-1022 bp Feature: domain Description: GIIM Note: maturase Location: 1115-1349 bp Feature: domain Description: GIIM Note: maturase Location: 1115-13 49 bp Feature: domain Description: HNHc Note: nucleases Location: 1547-1682 bp Feature: domain Description: HNHc Note: nucleases Location: 1547-1682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: WVYK01001246.1 Anaerolineae bacterium isolate CS2-C105 C_merged_R1_(paired)_contig_30090, whole genome shotgun sequence (2231 bp)
Overview 1 RT 1: 190-2132 bp Neighborhood of RT #1 [190, 2230] RVT-GII Feature: gene Location: 190-471 bp Feature: gene Location: 1024-1821 bp Feature: gene Location: 1787-2230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1790-2132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1790-2132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WVYK01000063.1 Anaerolineae bacterium isolate CS2-C105 C_merged_R1_(paired)_contig_32140, whole genome shotgun sequence (5618 bp)
Overview 1 RT 1: 338-5614 bp Neighborhood of RT #1 [338, 5616] Succinoglycan_BP_ExoA PRK01103 RVT-CRISPR-like GIIM RVT-CRISPR-like GIIM PLN02791 Feature: gene Location: 338-1324 bp Feature: domain Description: Succinoglycan_BP_ExoA Location: 347-1022 bp Feature: domain Description: Succinoglycan_BP_ExoA Location: 347-1022 bp Feature: gene Location: 1317-2141 bp Feature: domain Description: PRK01103 Location: 1320-2127 bp Feature: domain Description: PRK01103 Location: 1320-2127 bp Feature: gene Location: 2362-4884 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2599-3187 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 25 99-3187 bp Feature: domain Description: GIIM Note: maturase Location: 3322-3520 bp Feature: domain Description: GIIM Note: maturase Location: 3322-35 20 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3859-4462 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 385 9-4462 bp Feature: domain Description: GIIM Note: maturase Location: 4663-4780 bp Feature: domain Description: GIIM Note: maturase Location: 4663-4780 bp Feature: gene Location: 5353-5616 bp Feature: domain Description: PLN02791 Location: 5368-5614 bp Feature: domain Description: PLN02791 Location: 5 368-5 614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Succinoglycan_BP_ExoA (cd02525), PRK01103 (bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase), RVT-CRISPR, GIIM (pfam08388), PLN02791 (Nudix hydrolase homolog)

Seq: WVYK01000904.1 Anaerolineae bacterium isolate CS2-C105 C_merged_R1_(paired)_contig_37887, whole genome shotgun sequence (1343 bp)
Overview 1 RT 1: 365-1339 bp Neighborhood of RT #1 [365, 1341] RVT-GII Feature: gene Location: 365-511 bp Feature: gene Location: 1051-1341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072-1339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WVYK01000792.1 Anaerolineae bacterium isolate CS2-C105 C_merged_R1_(paired)_contig_62600, whole genome shotgun sequence (1366 bp)
Overview 1 RT 1: 3-1089 bp Neighborhood of RT #1 [3, 1091] group_II_RT_mat RVT-UNC GIIM Feature: gene Location: 3-1091 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12-114 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12-114 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 198-786 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 198-7 86 bp Feature: domain Description: GIIM Note: maturase Location: 918-1089 bp Feature: domain Description: GIIM Note: maturase Location: 918-1089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-UG26/RVT-CRISPR/RVT-GII(RVT-UNC), GIIM (pfam08388)

Seq: WVYK01000852.1 Anaerolineae bacterium isolate CS2-C105 C_merged_R1_(paired)_contig_76604, whole genome shotgun sequence (2047 bp)
Overview 1 RT 1: 241-1760 bp Neighborhood of RT #1 [241, 1843] RVT-GII GIIM Feature: gene Location: 241-453 bp Feature: gene Location: 566-1843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 42-1475 bp Feature: domain Description: GIIM Note: maturase Location: 1547-1760 bp Feature: domain Description: GIIM Note: maturase Location: 1547-1760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)