myRT

myRT report for GCA_011800555.1_ASM1180055v1

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Seq: JAALLH010000001.1 Streptomyces malaysiensis strain DSM 14702 A843_AS5_SC1, whole genome shotgun sequence (8908535 bp)
Overview 1 RT 1: 2693178-2698861 bp 2 RT 2: 8812569-8827760 bp 3 RT 3: 8886043-8898183 bp Neighborhood of RT #1 [2693178, 2698902] Tra8 Tra8 RVT_N RVT-GII GIIM Tra8 LutB Neighborhood of RT #2 [8812569, 8827760] DUF4096 COG3293 RVT-GII Intron_maturas2 HNHc RVT-GII GIIM RVT-GII RVT-GII KOG4768 Resolvase Recombinase Zn_ribbon_recom arc_metj RVT-GII Nterm_IS4 DDE_Tnp_1 Neighborhood of RT #3 [8886043, 8898257] RVT_N RVT-GII DDE_Tnp_1_4 Resolvase Recombinase Zn_ribbon_recom RVT-GII Intron_maturas2 HNHc DDE_Tnp_4 PBP2_MidA_like Feature: gene Location: 2693178-2693630 bp Feature: gene Location: 2693694-2694581 bp Feature: domain Description: Tra8 Location: 2693883-2694144 bp Feature: domain Description: Tra8 Location: 2693883-26941 44 bp Feature: domain Description: Tra8 Location: 2694240-2694534 bp Feature: domain Description: Tra8 Location: 2694240-2694534 bp Feature: gene Location: 2695255-2697006 bp Feature: domain Description: RVT_N Location: 2695288-2695528 bp Feature: domain Description: RVT_N Location: 2695288-2695528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2695585-2696245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2695585-2696245 bp Feature: domain Description: GIIM Note: maturase Location: 2696302-2696530 bp Feature: domain Description: GIIM Note: maturase Location: 2696302-2696530 bp Feature: gene Location: 2697118-2697381 bp Feature: domain Description: Tra8 Location: 2697217-2697322 bp Feature: domain Description: Tra8 Location: 269721 7-2697322 bp Feature: gene Location: 2697409-2698902 bp Feature: domain Description: LutB Location: 2697442-2698861 bp Feature: domain Description: LutB Location: 2697442-2698861 bp Feature: gene Location: 8812569-8813138 bp Feature: domain Description: DUF4096 Location: 8812611-8812848 bp Feature: domain Description: DUF4096 Location: 881 261 1 -881 2848 bp Feature: domain Description: COG3293 Location: 8812998-8813094 bp Feature: domain Description: COG3293 Location: 881 2998-881 3094 bp Feature: gene Location: 8813187-8813474 bp Feature: gene Location: 8814684-8816510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8814951-8815746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 4951 -881 5746 bp Feature: domain Description: Intron_maturas2 Location: 8815845-8816082 bp Feature: domain Description: Intron_maturas2 Location: 881 5845-881 6082 bp Feature: domain Description: HNHc Note: nucleases Location: 8816250-8816442 bp Feature: domain Description: HNHc Note: nucleases Location: 881 6250-881 6442 bp Feature: gene Location: 8817230-8818483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8817446-8818106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 7446-881 81 06 bp Feature: domain Description: GIIM Note: maturase Location: 8818187-8818418 bp Feature: domain Description: GIIM Note: maturase Location: 881 81 87-881 841 8 bp Feature: gene Location: 8818585-8819115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8818828-8819032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 8828-881 9032 bp Feature: gene Location: 8820647-8820880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8820653-8820836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8820653-8820836 bp Feature: gene Location: 8821017-8821607 bp Feature: domain Description: KOG4768 Location: 8821023-8821596 bp Feature: domain Description: KOG4768 Location: 8821 023-8821 596 bp Feature: gene Location: 8822321-8824114 bp Feature: domain Description: Resolvase Location: 8822333-8822771 bp Feature: domain Description: Resolvase Location: 8822333-8822771 bp Feature: domain Description: Recombinase Location: 8822861-8823224 bp Feature: domain Description: Recombinase Location: 8822861 -8823224 bp Feature: domain Description: Zn_ribbon_recom Location: 8823263-8823455 bp Feature: domain Description: Zn_ribbon_recom Location: 8823263-8823455 bp Feature: gene Location: 8824247-8824594 bp Feature: domain Description: arc_metj Location: 8824451-8824568 bp Feature: domain Description: arc_metj Location: 8824451 -8824568 bp Feature: gene Location: 8824672-8825313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8824888-8825281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8824888-8825281 bp Feature: gene Location: 8825955-8827397 bp Feature: domain Description: Nterm_IS4 Location: 8826093-8826369 bp Feature: domain Description: Nterm_IS4 Location: 8826093-8826369 bp Feature: domain Description: DDE_Tnp_1 Location: 8826426-8827071 bp Feature: domain Description: DDE_Tnp_1 Location: 8826426-8827071 bp Feature: gene Location: 8827467-8827760 bp Feature: gene Location: 8886043-8886384 bp Feature: gene Location: 8886528-8887505 bp Feature: gene Location: 8888280-8888822 bp Feature: domain Description: RVT_N Location: 8888304-8888541 bp Feature: domain Description: RVT_N Location: 8888304-8888541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8888601-8888790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8888601 -8888790 bp Feature: gene Location: 8889475-8890860 bp Feature: domain Description: DDE_Tnp_1_4 Location: 8889487-8890834 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 8889487-8890834 bp Feature: gene Location: 8891077-8893227 bp Feature: domain Description: Resolvase Location: 8891089-8891527 bp Feature: domain Description: Resolvase Location: 8891 089-8891 527 bp Feature: domain Description: Recombinase Location: 8891617-8891980 bp Feature: domain Description: Recombinase Location: 8891 61 7-8891 980 bp Feature: domain Description: Zn_ribbon_recom Location: 8892019-8892211 bp Feature: domain Description: Zn_ribbon_recom Location: 889201 9-889221 1 bp Feature: gene Location: 8893576-8895225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8893666-8894461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8893666-8894461 bp Feature: domain Description: Intron_maturas2 Location: 8894560-8894797 bp Feature: domain Description: Intron_maturas2 Location: 8894560-8894797 bp Feature: domain Description: HNHc Note: nucleases Location: 8894965-8895157 bp Feature: domain Description: HNHc Note: nucleases Location: 8894965-88951 57 bp Feature: gene Location: 8896689-8897255 bp Feature: domain Description: DDE_Tnp_4 Location: 8896764-8897097 bp Feature: domain Description: DDE_Tnp_4 Location: 8896764-8897097 bp Feature: gene Location: 8897466-8898257 bp Feature: domain Description: PBP2_MidA_like Location: 8897499-8898183 bp Feature: domain Description: PBP2_MidA_like Location: 8897499-88981 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LutB (COG1139), DUF4096 (pfam13340), COG3293 (Transposase ), Intron_maturas2 (pfam01348), HNHc (smart00507), KOG4768 (KOG4768, Mitochondrial mRNA maturase )
Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), arc_metj (LOAD_arc_metj), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), DDE_Tnp_1_4 (pfam13701), DDE_Tnp_4 (pfam13359), PBP2_MidA_like (cd01004)

Seq: JAALLH010000002.1 Streptomyces malaysiensis strain DSM 14702 A843_AS5_SC2c, whole genome shotgun sequence (1727442 bp)
Overview 1 RT 1: 135863-141093 bp Neighborhood of RT #1 [135863, 141116] PHA02517 RVT_N RVT-GII GIIM Tra8 Tra8 PHA02517 Feature: gene Location: 135863-136546 bp Feature: domain Description: PHA02517 Location: 135935-136502 bp Feature: domain Description: PHA02 517 Location: 135935-136502 bp Feature: gene Location: 135998-136834 bp Feature: gene Location: 137416-139167 bp Feature: domain Description: RVT_N Location: 137449-137689 bp Feature: domain Description: RVT_N Location: 137449-137689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137746-138406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137746-138406 bp Feature: domain Description: GIIM Note: maturase Location: 138463-138691 bp Feature: domain Description: GIIM Note: maturase Location: 138463-138691 bp Feature: gene Location: 139841-140725 bp Feature: domain Description: Tra8 Location: 140021-140282 bp Feature: domain Description: Tra8 Location: 14002 1-1402 82 bp Feature: domain Description: Tra8 Location: 140381-140678 bp Feature: domain Description: Tra8 Location: 140381-140678 bp Feature: gene Location: 140934-141116 bp Feature: domain Description: PHA02517 Location: 140943-141093 bp Feature: domain Description: PHA02 517 Location: 140943-141093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Tra8 (COG2826)

Seq: JAALLH010000003.1 Streptomyces malaysiensis strain DSM 14702 A843_AS5_SC3, whole genome shotgun sequence (48891 bp)
Overview 1 RT 1: 1-8751 bp Neighborhood of RT #1 [1, 8777] RVT-GII Intron_maturas2 HNHc DUF4096 TIGR02246 KOG1610 RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Feature: gene Location: 1-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166-961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166-961 bp Feature: domain Description: Intron_maturas2 Location: 1078-1291 bp Feature: domain Description: Intron_maturas2 Location: 1078-1291 bp Feature: domain Description: HNHc Note: nucleases Location: 1483-1642 bp Feature: domain Description: HNHc Note: nucleases Location: 1483 -1642 bp Feature: gene Location: 1882-2472 bp Feature: gene Location: 2683-3054 bp Feature: domain Description: DUF4096 Location: 2728-2956 bp Feature: domain Description: DUF4096 Location: 2728-2956 bp Feature: gene Location: 4276-4713 bp Feature: domain Description: TIGR02246 Location: 4291-4657 bp Feature: domain Description: TIGR02246 Location: 4291-4657 bp Feature: gene Location: 5168-5848 bp Feature: domain Description: KOG1610 Location: 5189-5813 bp Feature: domain Description: KOG1610 Location: 5189-5813 bp Feature: gene Location: 6070-6792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6076-6217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6076-6217 bp Feature: domain Description: GIIM Note: maturase Location: 6289-6508 bp Feature: domain Description: GIIM Note: maturase Location: 6289-6508 bp Feature: gene Location: 6901-7890 bp Feature: domain Description: Phage_int_SAM_1 Location: 6937-7186 bp Feature: domain Description: Phage_int_SAM_1 Location: 693 7-7186 bp Feature: domain Description: INT_RitC_C_like Location: 7273-7816 bp Feature: domain Description: INT_RitC_C_like Location: 7273 -7816 bp Feature: gene Location: 7887-8777 bp Feature: domain Description: INT_RitB_C_like Location: 8166-8751 bp Feature: domain Description: INT_RitB_C_like Location: 8166-8751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4096 (pfam13340), TIGR02246 (conserved hypothetical protein), KOG1610 (KOG1610, Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases ), GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797)

Seq: JAALLH010000004.1 Streptomyces malaysiensis strain DSM 14702 A843_AS5_SC5, whole genome shotgun sequence (2072 bp)
Overview 1 RT 1: 640-1828 bp Neighborhood of RT #1 [640, 1893] RVT-GII GIIM Feature: gene Location: 640-1893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856-1516 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1828 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)