myRT

myRT report for GCA_011812765.1_ASM1181276v1

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Seq: JAATKO010000095.1 Escherichia coli strain 1854 NODE_129_length_17656_cov_13.031434, whole genome shotgun sequence (17746 bp)
Overview 1 RT 1: 12827-16709 bp Neighborhood of RT #1 [12827, 16714] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 12827-13543 bp Feature: domain Description: rph Location: 12830-13538 bp Feature: domain Description: rph Location: 1 2830-1 3538 bp Feature: gene Location: 13594-14250 bp Feature: domain Description: pyrE Location: 13612-14245 bp Feature: domain Description: pyrE Location: 1 361 2-1 4245 bp Feature: gene Location: 14548-15507 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14683-15232 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4683-1 5232 bp Feature: gene Location: 15553-16149 bp Feature: domain Description: slmA Location: 15559-16135 bp Feature: domain Description: slmA Location: 1 5559-1 61 35 bp Feature: gene Location: 16256-16714 bp Feature: domain Description: dut Location: 16262-16709 bp Feature: domain Description: dut Location: 1 6262-1 6709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JAATKO010000384.1 Escherichia coli strain 1854 NODE_504_length_3790_cov_11.431926, whole genome shotgun sequence (3844 bp)
Overview 1 RT 1: 958-3584 bp Neighborhood of RT #1 [958, 3584] YhhI YhhI IS285 RVT-GII Feature: gene Location: 958-1809 bp Feature: domain Description: YhhI Location: 961-1321 bp Feature: domain Description: YhhI Location: 961-132 1 bp Feature: domain Description: YhhI Location: 1381-1735 bp Feature: domain Description: YhhI Location: 1381-1735 bp Feature: gene Location: 1820-2569 bp Feature: domain Description: IS285 Location: 1850-2540 bp Feature: domain Description: IS2 85 Location: 1850-2 540 bp Feature: gene Location: 2618-2911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2789-2897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 789-2 897 bp Feature: gene Location: 2972-3193 bp Feature: gene Location: 3336-3584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, YhhI (COG5433)

Seq: JAATKO010000540.1 Escherichia coli strain 1854 NODE_719_length_1822_cov_33.642151, whole genome shotgun sequence (1912 bp)
Overview 1 RT 1: 1-1807 bp Neighborhood of RT #1 [1, 1836] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-1836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-1099 bp Feature: domain Description: Intron_maturas2 Location: 1213-1471 bp Feature: domain Description: Intron_maturas2 Location: 1213 -1471 bp Feature: domain Description: HNHc Note: nucleases Location: 1645-1807 bp Feature: domain Description: HNHc Note: nucleases Location: 1645-1807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)