myRT

myRT report for GCA_011812805.1_ASM1181280v1

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Seq: JAATKV010000001.1 Escherichia coli strain 4516 NODE_1_length_38937_cov_11.307651, whole genome shotgun sequence (39017 bp)
Overview 1 RT 1: 27471-30539 bp Neighborhood of RT #1 [27471, 30539] RVT-UG2 PinE Feature: gene Location: 27471-27659 bp Feature: gene Location: 27931-28110 bp Feature: gene Location: 28189-29526 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 28441-29233 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 28441 -29233 bp Feature: gene Location: 29625-30257 bp Feature: domain Description: PinE Location: 29688-30243 bp Feature: domain Description: PinE Location: 29688-30243 bp Feature: gene Location: 30396-30539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, PinE (COG1961)

Seq: JAATKV010000247.1 Escherichia coli strain 4516 NODE_310_length_29040_cov_14.758230, whole genome shotgun sequence (29120 bp)
Overview 1 RT 1: 10156-13862 bp Neighborhood of RT #1 [10156, 13867] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 10156-10287 bp Feature: gene Location: 10685-10882 bp Feature: gene Location: 11051-11485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11243-11459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 43-11459 bp Feature: gene Location: 11458-12111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11461-11869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11461-11869 bp Feature: domain Description: GIIM Note: maturase Location: 11917-12109 bp Feature: domain Description: GIIM Note: maturase Location: 11917-12 109 bp Feature: gene Location: 12487-12705 bp Feature: gene Location: 12836-13867 bp Feature: domain Description: LacI Location: 12878-13013 bp Feature: domain Description: LacI Location: 12 878-13013 bp Feature: domain Description: PBP1_GntR Location: 13052-13862 bp Feature: domain Description: PBP1_GntR Location: 13052 -13862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: JAATKV010000693.1 Escherichia coli strain 4516 NODE_887_length_8343_cov_37.602661, whole genome shotgun sequence (8433 bp)
Overview 1 RT 1: 81-2127 bp Neighborhood of RT #1 [81, 2144] RVT-GII PRK10276 Feature: gene Location: 81-830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87-699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87-699 bp Feature: gene Location: 805-1407 bp Feature: gene Location: 1461-2144 bp Feature: domain Description: PRK10276 Location: 1764-2127 bp Feature: domain Description: PRK10276 Location: 1764-2127 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)