myRT

myRT report for GCA_011812865.1_ASM1181286v1

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Seq: JAATKU010000105.1 Escherichia coli strain 5134 NODE_105_length_1537_cov_72.0369, whole genome shotgun sequence (1537 bp)
Overview 1 RT 1: 138-1536 bp Neighborhood of RT #1 [138, 1535] PHA02517 RVT-GII Feature: gene Location: 138-617 bp Feature: domain Description: PHA02517 Location: 198-552 bp Feature: domain Description: PHA0251 7 Location: 1 98-552 bp Feature: gene Location: 1209-1535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1482-1536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 482-1 536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: JAATKU010000036.1 Escherichia coli strain 5134 NODE_36_length_39816_cov_28.6983, whole genome shotgun sequence (39816 bp)
Overview 1 RT 1: 36607-39605 bp Neighborhood of RT #1 [36607, 39619] YhhI YhhI YhhI RVT-GII GIIM YhhI Feature: gene Location: 36607-37566 bp Feature: domain Description: YhhI Location: 36613-36958 bp Feature: domain Description: YhhI Location: 36613-36958 bp Feature: domain Description: YhhI Location: 37015-37369 bp Feature: domain Description: YhhI Location: 37015-37369 bp Feature: domain Description: YhhI Location: 37369-37549 bp Feature: domain Description: YhhI Location: 37369-37549 bp Feature: gene Location: 37594-37734 bp Feature: gene Location: 38098-39348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38302-38959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38302 -38959 bp Feature: domain Description: GIIM Note: maturase Location: 39040-39262 bp Feature: domain Description: GIIM Note: maturase Location: 39040-392 62 bp Feature: gene Location: 39359-39619 bp Feature: domain Description: YhhI Location: 39434-39605 bp Feature: domain Description: YhhI Location: 39434-39605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: JAATKU010000003.1 Escherichia coli strain 5134 NODE_3_length_267618_cov_25.6963, whole genome shotgun sequence (267618 bp)
Overview 1 RT 1: 69670-76122 bp Neighborhood of RT #1 [69670, 76122] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 69670-69975 bp Feature: gene Location: 70858-73134 bp Feature: domain Description: AAA_15 Location: 70891-71899 bp Feature: domain Description: AAA_15 Location: 70891-71899 bp Feature: gene Location: 73249-74349 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73432-73960 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73 43 2-73 960 bp Feature: gene Location: 75005-75841 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 75494-75665 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 75494-75665 bp Feature: gene Location: 75871-76122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: JAATKU010000067.1 Escherichia coli strain 5134 NODE_67_length_11399_cov_34.1563, whole genome shotgun sequence (11399 bp)
Overview 1 RT 1: 10315-11239 bp Neighborhood of RT #1 [10315, 11397] PRK10173 PRK10173 RVT-GII Feature: gene Location: 10315-10764 bp Feature: domain Description: PRK10173 Location: 10318-10756 bp Feature: domain Description: PRK10173 Location: 10318-10756 bp Feature: gene Location: 10748-11059 bp Feature: domain Description: PRK10173 Location: 10751-10970 bp Feature: domain Description: PRK10173 Location: 10751-10970 bp Feature: gene Location: 11098-11397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11167-11239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11167-11239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: JAATKU010000095.1 Escherichia coli strain 5134 NODE_95_length_1915_cov_48.0464, whole genome shotgun sequence (1915 bp)
Overview 1 RT 1: 121-1668 bp Neighborhood of RT #1 [121, 1913] PHA02517 RVT-GII GIIM Feature: gene Location: 121-477 bp Feature: domain Description: PHA02517 Location: 124-433 bp Feature: domain Description: PHA025 17 Location: 124-433 bp Feature: gene Location: 594-1913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663-1395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663-1395 bp Feature: domain Description: GIIM Note: maturase Location: 1470-1668 bp Feature: domain Description: GIIM Note: maturase Location: 1470-1668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)