myRT

myRT report for GCA_011881545.1_ASM1188154v1

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Seq: JAATNS010000299.1 Clostridioides difficile strain HC71 NODE_408_length_14281_cov_53.347385, whole genome shotgun sequence (14371 bp)
Overview 1 RT 1: 4860-10984 bp Neighborhood of RT #1 [4860, 10989] alaS RVT-GII HNHc alaS IreB-like Feature: gene Location: 4860-5462 bp Feature: domain Description: alaS Location: 4872-5448 bp Feature: domain Description: alaS Location: 4872-5448 bp Feature: gene Location: 6180-6449 bp Feature: gene Location: 6709-8550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7054-7753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7054-7753 bp Feature: domain Description: HNHc Note: nucleases Location: 8290-8428 bp Feature: domain Description: HNHc Note: nucleases Location: 8290-8428 bp Feature: gene Location: 8746-10707 bp Feature: domain Description: alaS Location: 8749-10699 bp Feature: domain Description: alaS Location: 8749-1 0699 bp Feature: gene Location: 10732-10989 bp Feature: domain Description: IreB-like Location: 10741-10984 bp Feature: domain Description: IreB-like Location: 1 0741 -1 0984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IreB-like (PRK05473), alaS (TIGR00344), RVT-GII, HNHc (smart00507)

Seq: JAATNS010000481.1 Clostridioides difficile strain HC71 NODE_605_length_11755_cov_45.672482, whole genome shotgun sequence (11845 bp)
Overview 1 RT 1: 174-5256 bp Neighborhood of RT #1 [174, 5264] BaeS OmpR RVT-GII HNHc orf27 Feature: gene Location: 174-1334 bp Feature: domain Description: BaeS Location: 603-1299 bp Feature: domain Description: BaeS Location: 603-12 99 bp Feature: gene Location: 1435-1842 bp Feature: domain Description: OmpR Location: 1471-1834 bp Feature: domain Description: OmpR Location: 1471-1834 bp Feature: gene Location: 1900-3771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2260-2962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 60-2 962 bp Feature: domain Description: HNHc Note: nucleases Location: 3499-3625 bp Feature: domain Description: HNHc Note: nucleases Location: 3499-362 5 bp Feature: gene Location: 4024-4269 bp Feature: gene Location: 4932-5264 bp Feature: domain Description: orf27 Location: 4941-5256 bp Feature: domain Description: orf2 7 Location: 4941-52 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), BaeS (COG0642), RVT-GII, HNHc (smart00507), orf27 (CHL00148)