myRT

myRT report for GCA_011881635.1_ASM1188163v1

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Seq: JAATUZ010000152.1 Escherichia coli strain SCPM-O-B-8800 152length=1708, whole genome shotgun sequence (1708 bp)
Overview 1 RT 1: 114-1706 bp Neighborhood of RT #1 [114, 1706] RVT-GII GIIM Feature: gene Location: 114-1346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 5-969 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1269 bp Feature: domain Description: GIIM Note: maturase Location: 1 047-1 269 bp Feature: gene Location: 1341-1706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAATUZ010000050.1 Escherichia coli strain SCPM-O-B-8800 50length=29554, whole genome shotgun sequence (29554 bp)
Overview 1 RT 1: 23539-27282 bp Neighborhood of RT #1 [23539, 27293] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23539-24021 bp Feature: domain Description: SmpB Location: 23569-24016 bp Feature: domain Description: SmpB Location: 2 3569-2 4016 bp Feature: gene Location: 24173-24322 bp Feature: gene Location: 24707-25480 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24842-25295 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 4842 -2 52 95 bp Feature: gene Location: 25884-26102 bp Feature: domain Description: PRK09678 Location: 25887-26085 bp Feature: domain Description: PRK09678 Location: 2 5887-2 6085 bp Feature: gene Location: 26193-27293 bp Feature: domain Description: D Location: 26199-27282 bp Feature: domain Description: D Location: 2 6199-2 72 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: JAATUZ010000057.1 Escherichia coli strain SCPM-O-B-8800 57length=25122, whole genome shotgun sequence (25122 bp)
Overview 1 RT 1: 16295-21632 bp Neighborhood of RT #1 [16295, 21640] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 16295-17212 bp Feature: domain Description: PFLE_PFLC Location: 16331-17186 bp Feature: domain Description: PFLE_PFLC Location: 163 3 1-17186 bp Feature: gene Location: 17349-18254 bp Feature: gene Location: 18740-19279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19070-19148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19070-19148 bp Feature: gene Location: 19307-19828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19313-19595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 13 -19595 bp Feature: domain Description: GIIM Note: maturase Location: 19643-19823 bp Feature: domain Description: GIIM Note: maturase Location: 19643 -19823 bp Feature: gene Location: 20150-20338 bp Feature: gene Location: 20378-21640 bp Feature: domain Description: YesM Location: 20891-21632 bp Feature: domain Description: YesM Location: 20891-2163 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JAATUZ010000068.1 Escherichia coli strain SCPM-O-B-8800 68length=16355, whole genome shotgun sequence (16355 bp)
Overview 1 RT 1: 4199-7838 bp Neighborhood of RT #1 [4199, 8005] InsE PHA02517 RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 4199-4501 bp Feature: domain Description: InsE Location: 4238-4487 bp Feature: domain Description: InsE Location: 4 238-4 4 87 bp Feature: gene Location: 4557-4982 bp Feature: domain Description: PHA02517 Location: 4581-4917 bp Feature: domain Description: PHA02517 Location: 4 581-4 917 bp Feature: gene Location: 5574-7097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5847-6579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584 7-6579 bp Feature: domain Description: GIIM Note: maturase Location: 6654-6852 bp Feature: domain Description: GIIM Note: maturase Location: 6654 -6852 bp Feature: gene Location: 7262-7426 bp Feature: domain Description: PHA02517 Location: 7265-7355 bp Feature: domain Description: PHA02517 Location: 7265-7355 bp Feature: gene Location: 7592-8005 bp Feature: domain Description: COG2085 Location: 7691-7838 bp Feature: domain Description: COG2085 Location: 7691-7838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme )

Seq: JAATUZ010000087.1 Escherichia coli strain SCPM-O-B-8800 87length=8639, whole genome shotgun sequence (8639 bp)
Overview 1 RT 1: 1686-6723 bp Neighborhood of RT #1 [1686, 6723] P Q RVT-Retrons Feature: gene Location: 1686-3452 bp Feature: domain Description: P Location: 1713-3447 bp Feature: domain Description: P Location: 1713-3447 bp Feature: gene Location: 3452-4480 bp Feature: domain Description: Q Location: 3458-4475 bp Feature: domain Description: Q Location: 345 8-4475 bp Feature: gene Location: 4496-5470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4658-5207 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 465 8-5 207 bp Feature: gene Location: 5620-6525 bp Feature: gene Location: 6556-6723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons