myRT

myRT report for GCA_011947185.1_ASM1194718v1

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Seq: JAATVZ010000007.1 Pseudomonas aeruginosa strain Pa-3 NODE_7_length_312840_cov_19.176472, whole genome shotgun sequence (312840 bp)
Overview 1 RT 1: 232101-241404 bp Neighborhood of RT #1 [232101, 241406] HipA_So_like RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 232101-232307 bp Feature: gene Location: 232322-232639 bp Feature: domain Description: HipA_So_like Location: 232361-232601 bp Feature: domain Description: HipA_So_like Location: 232361 -232601 bp Feature: gene Location: 232943-234628 bp Feature: RT Description: RVT_N Location: 233000-233240 bp Feature: RT Description: RVT_N Location: 233000-233240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233288-233924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233288-233924 bp Feature: domain Description: GIIM Note: maturase Location: 233978-234209 bp Feature: domain Description: GIIM Note: maturase Location: 233978-234209 bp Feature: domain Description: HNH Note: nucleases Location: 234461-234599 bp Feature: domain Description: HNH Note: nucleases Location: 234461 -234599 bp Feature: gene Location: 235709-239446 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 235817-236474 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 23581 7-236474 bp Feature: domain Description: PRK09776 Location: 236687-237158 bp Feature: domain Description: PRK09776 Location: 236687-2371 58 bp Feature: domain Description: PAS Location: 237215-237740 bp Feature: domain Description: PAS Location: 23721 5-237740 bp Feature: domain Description: PRK10060 Location: 237749-239396 bp Feature: domain Description: PRK1 0060 Location: 237749-239396 bp Feature: gene Location: 239553-241406 bp Feature: domain Description: PRK05658 Location: 239565-241404 bp Feature: domain Description: PRK05658 Location: 239565-241 404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA_So_like (cd17809), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)