myRT

myRT report for GCA_011958815.1_ASM1195881v1

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Seq: BLLS01000001.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_1, whole genome shotgun sequence (125378 bp)
Overview 1 RT 1: 58346-68667 bp 2 RT 2: 108885-113581 bp Neighborhood of RT #1 [58346, 68678] DUF1566 RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [108885, 113581] RVT-UG27 Feature: gene Location: 58346-60304 bp Feature: gene Location: 60367-60720 bp Feature: gene Location: 60711-62132 bp Feature: domain Description: DUF1566 Location: 60783-60927 bp Feature: domain Description: DUF1 566 Location: 60783-60927 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61116-61860 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61 1 1 6-61 860 bp Feature: gene Location: 62145-62546 bp Feature: domain Description: Avd_like Location: 62184-62523 bp Feature: domain Description: Avd_like Location: 621 84-62523 bp Feature: gene Location: 62676-68678 bp Feature: domain Description: DUF1566 Location: 68361-68667 bp Feature: domain Description: DUF1 566 Location: 68361 -68667 bp Feature: gene Location: 108885-109496 bp Feature: gene Location: 109579-109809 bp Feature: gene Location: 109806-111074 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 109995-110631 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 09995-1 1 0631 bp Feature: gene Location: 112099-112557 bp Feature: gene Location: 112592-113581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), RVT-UG27

Seq: BLLS01000002.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_2, whole genome shotgun sequence (125180 bp)
Overview 1 RT 1: 8075-11209 bp Neighborhood of RT #1 [8075, 11250] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 8075-8308 bp Feature: gene Location: 8292-8801 bp Feature: gene Location: 8867-10459 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9362-9959 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9362 -9959 bp Feature: gene Location: 10604-10906 bp Feature: domain Description: HTH_XRE Location: 10709-10868 bp Feature: domain Description: HTH_XRE Location: 10709-10868 bp Feature: gene Location: 10903-11250 bp Feature: domain Description: Gp49 Location: 10951-11209 bp Feature: domain Description: Gp49 Location: 10951-112 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)

Seq: BLLS01000009.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_9, whole genome shotgun sequence (68233 bp)
Overview 1 RT 1: 18741-22577 bp Neighborhood of RT #1 [18741, 22577] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 18741-19211 bp Feature: domain Description: Phage_holin_4_1 Location: 18828-19140 bp Feature: domain Description: Phage_holin_4_1 Location: 18828-19140 bp Feature: gene Location: 19213-19584 bp Feature: gene Location: 19562-20596 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19772-20384 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19772-203 84 bp Feature: gene Location: 20855-21199 bp Feature: gene Location: 21243-22577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: BLLS01000023.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_23, whole genome shotgun sequence (43499 bp)
Overview 1 RT 1: 1132-4519 bp Neighborhood of RT #1 [1132, 4519] PRK09741 RVT-DGRs Feature: gene Location: 1132-1563 bp Feature: domain Description: PRK09741 Location: 1219-1552 bp Feature: domain Description: PRK0974 1 Location: 1219-1552 bp Feature: gene Location: 1695-2231 bp Feature: gene Location: 2564-3751 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2897-3524 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2897-3524 bp Feature: gene Location: 3714-4142 bp Feature: gene Location: 4139-4519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09741 (hypothetical protein; Provisional), RVT-DGRs

Seq: BLLS01000075.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_75, whole genome shotgun sequence (19697 bp)
Overview 1 RT 1: 7796-19516 bp Neighborhood of RT #1 [7796, 19516] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 7796-9595 bp Feature: domain Description: rpsA Location: 7865-9467 bp Feature: domain Description: rpsA Location: 7865 -9467 bp Feature: gene Location: 9692-15724 bp Feature: domain Description: DUF4011 Location: 10922-11435 bp Feature: domain Description: DUF4011 Location: 10922-11435 bp Feature: domain Description: DEXXQc_SF1 Location: 11774-12203 bp Feature: domain Description: DEXXQc_SF1 Location: 11774-12203 bp Feature: domain Description: DEXXQc_SF1 Location: 13202-13961 bp Feature: domain Description: DEXXQc_SF1 Location: 13202-13961 bp Feature: domain Description: TIGR00376 Location: 14090-14480 bp Feature: domain Description: TIGR00376 Location: 14090-14480 bp Feature: domain Description: MTES_1575 Location: 14633-14918 bp Feature: domain Description: MTES_15 75 Location: 14633-14918 bp Feature: domain Description: DUF3320 Location: 15239-15374 bp Feature: domain Description: DUF3320 Location: 15 239-15 374 bp Feature: gene Location: 15761-16891 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16082-16625 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16082-16625 bp Feature: gene Location: 17097-19256 bp Feature: gene Location: 19370-19516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: BLLS01000103.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_103, whole genome shotgun sequence (15517 bp)
Overview 1 RT 1: 5824-9857 bp Neighborhood of RT #1 [5824, 9877] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Feature: gene Location: 5824-6399 bp Feature: domain Description: TraO Location: 5899-6394 bp Feature: domain Description: TraO Location: 5899-6 394 bp Feature: gene Location: 6402-7109 bp Feature: domain Description: Bac_Flav_CT_N Location: 6525-7086 bp Feature: domain Description: Bac_Flav_CT_N Location: 6 525-7086 bp Feature: gene Location: 7099-8910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7363-8185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736 3-8185 bp Feature: domain Description: Intron_maturas2 Location: 8257-8566 bp Feature: domain Description: Intron_maturas2 Location: 8257-856 6 bp Feature: gene Location: 8945-9280 bp Feature: gene Location: 9452-9877 bp Feature: domain Description: Bac_Flav_CT_N Location: 9455-9857 bp Feature: domain Description: Bac_Flav_CT_N Location: 9455-9857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348)

Seq: BLLS01000105.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_105, whole genome shotgun sequence (15134 bp)
Overview 1 RT 1: 10491-15131 bp Neighborhood of RT #1 [10491, 15131] AbiEii TraG-D_C RVT-GII Intron_maturas2 HNHc Feature: gene Location: 10491-11507 bp Feature: domain Description: AbiEii Location: 10602-11430 bp Feature: domain Description: AbiEii Location: 10602-11430 bp Feature: gene Location: 11551-12555 bp Feature: domain Description: TraG-D_C Location: 11929-12262 bp Feature: domain Description: TraG-D_C Location: 11929-12262 bp Feature: gene Location: 12519-14336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12786-13608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127 86-13608 bp Feature: domain Description: Intron_maturas2 Location: 13752-13986 bp Feature: domain Description: Intron_maturas2 Location: 137 52-13986 bp Feature: domain Description: HNHc Note: nucleases Location: 14157-14307 bp Feature: domain Description: HNHc Note: nucleases Location: 14157 -14307 bp Feature: gene Location: 14541-14786 bp Feature: gene Location: 14862-15131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BLLS01000122.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_122, whole genome shotgun sequence (12726 bp)
Overview 1 RT 1: 86-9651 bp Neighborhood of RT #1 [86, 9656] RVT-GII PRK00566 rpoB Feature: gene Location: 86-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 410-974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 410-974 bp Feature: gene Location: 1455-5738 bp Feature: domain Description: PRK00566 Location: 1476-5697 bp Feature: domain Description: PRK00566 Location: 1476-5697 bp Feature: gene Location: 5844-9656 bp Feature: domain Description: rpoB Location: 5865-9651 bp Feature: domain Description: rpoB Location: 58 65-9651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), rpoB (TIGR02013)

Seq: BLLS01000126.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_126, whole genome shotgun sequence (12533 bp)
Overview 1 RT 1: 6000-10682 bp Neighborhood of RT #1 [6000, 10682] TOPRIM_primases AAA_25 HTH_17 RVT-GII GIIM Feature: gene Location: 6000-8045 bp Feature: domain Description: TOPRIM_primases Location: 6699-6930 bp Feature: domain Description: TOPRIM_primases Location: 669 9 -69 30 bp Feature: domain Description: AAA_25 Location: 7140-7608 bp Feature: domain Description: AAA_25 Location: 7140-7608 bp Feature: gene Location: 8029-8373 bp Feature: domain Description: HTH_17 Location: 8146-8293 bp Feature: domain Description: HTH_17 Location: 8146-829 3 bp Feature: gene Location: 8702-9970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8915-9572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89 15-9 572 bp Feature: domain Description: GIIM Note: maturase Location: 9653-9860 bp Feature: domain Description: GIIM Note: maturase Location: 9 653-9 860 bp Feature: gene Location: 10147-10485 bp Feature: gene Location: 10533-10682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TOPRIM_primases (cd01029), AAA_25 (pfam13481), HTH_17 (pfam12728), RVT-GII, GIIM (pfam08388)

Seq: BLLS01000155.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_155, whole genome shotgun sequence (9275 bp)
Overview 1 RT 1: 1049-8862 bp Neighborhood of RT #1 [1049, 8862] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 1049-6454 bp Feature: domain Description: DUF1566 Location: 6185-6443 bp Feature: domain Description: DUF1566 Location: 6185-6443 bp Feature: gene Location: 6496-6852 bp Feature: domain Description: Avd_like Location: 6523-6832 bp Feature: domain Description: Avd_like Location: 6523-6832 bp Feature: gene Location: 6860-8272 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7250-7952 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7250-7952 bp Feature: gene Location: 8214-8606 bp Feature: gene Location: 8491-8862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: BLLS01000165.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_165, whole genome shotgun sequence (8209 bp)
Overview 1 RT 1: 2-3137 bp Neighborhood of RT #1 [2, 3137] group_II_RT_mat RVT-GII CcmA Feature: gene Location: 2-127 bp Feature: gene Location: 274-486 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 352-475 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 352-475 bp Feature: gene Location: 476-1267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521-1136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521-11 36 bp Feature: gene Location: 1353-2300 bp Feature: domain Description: CcmA Location: 1458-2208 bp Feature: domain Description: CcmA Location: 1458-2208 bp Feature: gene Location: 2307-3137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, CcmA (COG4133)

Seq: BLLS01000287.1 Bacteroides acidifaciens IMSAGC_001 DNA, IMSAGC_001_contig_287, whole genome shotgun sequence (1964 bp)
Overview 1 RT 1: 1-1963 bp Neighborhood of RT #1 [1, 1963] RVT-DGRs Feature: gene Location: 1-150 bp Feature: gene Location: 160-1503 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 367-958 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 367-958 bp Feature: gene Location: 1793-1963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs