myRT

myRT report for GCA_011959285.1_ASM1195928v1

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Seq: BLLW01000010.1 Lachnospiraceae bacterium IMSAGC_005 DNA, IMSAGC_005_contig_10, whole genome shotgun sequence (71944 bp)
Overview 1 RT 1: 49604-52398 bp Neighborhood of RT #1 [49604, 52398] RpfG RVT-UG26 Feature: gene Location: 49604-50647 bp Feature: domain Description: RpfG Location: 49613-50621 bp Feature: domain Description: RpfG Location: 4961 3-50621 bp Feature: gene Location: 50843-51187 bp Feature: gene Location: 51219-51740 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 51372-51735 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 51 372-51 735 bp Feature: gene Location: 51769-51984 bp Feature: gene Location: 51985-52398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpfG (COG3437), RVT-UG26

Seq: BLLW01000049.1 Lachnospiraceae bacterium IMSAGC_005 DNA, IMSAGC_005_contig_49, whole genome shotgun sequence (26534 bp)
Overview 1 RT 1: 25515-26329 bp Neighborhood of RT #1 [25515, 26532] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 25515-26003 bp Feature: domain Description: Phage_holin_4_1 Location: 25557-25887 bp Feature: domain Description: Phage_holin_4_1 Location: 2 5557-2 5887 bp Feature: gene Location: 25960-26178 bp Feature: gene Location: 26203-26532 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26209-26329 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 62 09-2 632 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: BLLW01000081.1 Lachnospiraceae bacterium IMSAGC_005 DNA, IMSAGC_005_contig_81, whole genome shotgun sequence (15540 bp)
Overview 1 RT 1: 10677-15216 bp Neighborhood of RT #1 [10677, 15218] YufO PBP1_BmpA_PnrA_like RVT-GII GIIM group_II_RT_mat Feature: gene Location: 10677-12218 bp Feature: domain Description: YufO Location: 10686-12186 bp Feature: domain Description: YufO Location: 10686-12186 bp Feature: gene Location: 12321-13568 bp Feature: domain Description: PBP1_BmpA_PnrA_like Location: 12504-13377 bp Feature: domain Description: PBP1_BmpA_PnrA_like Location: 12504-13 3 77 bp Feature: gene Location: 13835-14851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13841-14411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 841-14411 bp Feature: domain Description: GIIM Note: maturase Location: 14462-14690 bp Feature: domain Description: GIIM Note: maturase Location: 14462-14690 bp Feature: gene Location: 14871-15218 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 15051-15216 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 15051-15216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YufO (COG3845), PBP1_BmpA_PnrA_like, RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: BLLW01000142.1 Lachnospiraceae bacterium IMSAGC_005 DNA, IMSAGC_005_contig_142, whole genome shotgun sequence (5216 bp)
Overview 1 RT 1: 3-3458 bp Neighborhood of RT #1 [3, 3541] RVT-GII RVT-GII IstB_IS21 Feature: gene Location: 3-128 bp Feature: gene Location: 244-855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352-826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352-826 bp Feature: gene Location: 1370-2005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1574-2000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1574 -2000 bp Feature: gene Location: 2384-2662 bp Feature: gene Location: 2774-3541 bp Feature: domain Description: IstB_IS21 Location: 2933-3458 bp Feature: domain Description: IstB_IS21 Location: 2933-34 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IstB_IS21 (pfam01695)

Seq: BLLW01000218.1 Lachnospiraceae bacterium IMSAGC_005 DNA, IMSAGC_005_contig_218, whole genome shotgun sequence (1979 bp)
Overview 1 RT 1: 3-1863 bp Neighborhood of RT #1 [3, 1976] RVT-GII HNHc Feature: gene Location: 3-131 bp Feature: gene Location: 234-1976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1167 bp Feature: domain Description: HNHc Note: nucleases Location: 1698-1863 bp Feature: domain Description: HNHc Note: nucleases Location: 1698-1863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)