myRT

myRT report for GCA_011959925.1_ASM1195992v1

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Seq: BLMD01000014.1 Lachnospiraceae bacterium IMSAGC_012 DNA, IMSAGC_012_contig_14, whole genome shotgun sequence (2445 bp)
Overview 1 RT 1: 112-2026 bp Neighborhood of RT #1 [112, 2355] RVT-GII Intron_maturas2 Feature: gene Location: 112-321 bp Feature: gene Location: 565-2355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832-1645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832-1 645 bp Feature: domain Description: Intron_maturas2 Location: 1729-2026 bp Feature: domain Description: Intron_maturas2 Location: 1 729-2026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: BLMD01000069.1 Lachnospiraceae bacterium IMSAGC_012 DNA, IMSAGC_012_contig_69, whole genome shotgun sequence (7910 bp)
Overview 1 RT 1: 661-4351 bp Neighborhood of RT #1 [661, 4351] RVT-DGRs Avd_like Feature: gene Location: 661-1035 bp Feature: gene Location: 1050-1361 bp Feature: gene Location: 1367-2443 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1577-2240 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1577-2 2 40 bp Feature: gene Location: 2811-3227 bp Feature: domain Description: Avd_like Location: 2877-3201 bp Feature: domain Description: Avd_like Location: 2 877-32 01 bp Feature: gene Location: 3305-4351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: BLMD01000074.1 Lachnospiraceae bacterium IMSAGC_012 DNA, IMSAGC_012_contig_74, whole genome shotgun sequence (3873 bp)
Overview 1 RT 1: 402-3593 bp Neighborhood of RT #1 [402, 3865] RVT-GII GIIM DUF4203 Feature: gene Location: 402-1022 bp Feature: gene Location: 1347-1487 bp Feature: gene Location: 1588-2886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1843-2533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1843 -253 3 bp Feature: domain Description: GIIM Note: maturase Location: 2614-2809 bp Feature: domain Description: GIIM Note: maturase Location: 2614-2809 bp Feature: gene Location: 3044-3865 bp Feature: domain Description: DUF4203 Location: 3128-3593 bp Feature: domain Description: DUF4203 Location: 3 128-3 593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4203 (pfam13886)

Seq: BLMD01000165.1 Lachnospiraceae bacterium IMSAGC_012 DNA, IMSAGC_012_contig_165, whole genome shotgun sequence (2017 bp)
Overview 1 RT 1: 91-2016 bp Neighborhood of RT #1 [91, 2016] RVT-DGRs Feature: gene Location: 91-1323 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 385-1006 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 385-1006 bp Feature: gene Location: 1526-1663 bp Feature: gene Location: 1723-2016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: BLMD01000172.1 Lachnospiraceae bacterium IMSAGC_012 DNA, IMSAGC_012_contig_172, whole genome shotgun sequence (7364 bp)
Overview 1 RT 1: 66-2990 bp Neighborhood of RT #1 [66, 2995] RVT-DGRs Avd_like PHA00653 Feature: gene Location: 66-1136 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 306-933 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 306-933 bp Feature: gene Location: 1455-1811 bp Feature: domain Description: Avd_like Location: 1485-1791 bp Feature: domain Description: Avd_like Location: 1485 -1791 bp Feature: gene Location: 1853-2995 bp Feature: domain Description: PHA00653 Location: 1979-2990 bp Feature: domain Description: PHA0065 3 Location: 1979-2990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)

Seq: BLMD01000267.1 Lachnospiraceae bacterium IMSAGC_012 DNA, IMSAGC_012_contig_267, whole genome shotgun sequence (1822 bp)
Overview 1 RT 1: 97-1666 bp Neighborhood of RT #1 [97, 1821] RVT-GII GIIM Feature: gene Location: 97-378 bp Feature: gene Location: 412-1821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763-1381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76 3-1381 bp Feature: domain Description: GIIM Note: maturase Location: 1435-1666 bp Feature: domain Description: GIIM Note: maturase Location: 1435-16 6 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BLMD01000271.1 Lachnospiraceae bacterium IMSAGC_012 DNA, IMSAGC_012_contig_271, whole genome shotgun sequence (26265 bp)
Overview 1 RT 1: 23457-26262 bp Neighborhood of RT #1 [23457, 26262] RVT-DGRs Avd_like Feature: gene Location: 23457-23651 bp Feature: gene Location: 23668-23904 bp Feature: gene Location: 23858-25054 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24152-24755 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24152-247 55 bp Feature: gene Location: 25439-25849 bp Feature: domain Description: Avd_like Location: 25550-25829 bp Feature: domain Description: Avd_like Location: 25550-25829 bp Feature: gene Location: 25909-26262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: BLMD01000298.1 Lachnospiraceae bacterium IMSAGC_012 DNA, IMSAGC_012_contig_298, whole genome shotgun sequence (6228 bp)
Overview 1 RT 1: 273-3085 bp Neighborhood of RT #1 [273, 3085] RVT-GII Feature: gene Location: 273-704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531-654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531-654 bp Feature: gene Location: 1250-1468 bp Feature: gene Location: 1775-3085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BLMD01000417.1 Lachnospiraceae bacterium IMSAGC_012 DNA, IMSAGC_012_contig_417, whole genome shotgun sequence (1714 bp)
Overview 1 RT 1: 2-1241 bp Neighborhood of RT #1 [2, 1606] RVT_N RVT-GII GIIM Feature: gene Location: 2-1606 bp Feature: domain Description: RVT_N Location: 5-248 bp Feature: domain Description: RVT_N Location: 5-248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302-953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302-9 53 bp Feature: domain Description: GIIM Note: maturase Location: 1007-1241 bp Feature: domain Description: GIIM Note: maturase Location: 1007-1241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)