myRT

myRT report for GCA_011960065.1_ASM1196006v1

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Seq: BLME01000001.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_1, whole genome shotgun sequence (3771 bp)
Overview 1 RT 1: 119-3770 bp Neighborhood of RT #1 [119, 3770] RVT-UG24 Feature: gene Location: 119-3370 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 641-1088 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 641 -1 088 bp Feature: gene Location: 3357-3770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG24

Seq: BLME01000158.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_158, whole genome shotgun sequence (10341 bp)
Overview 1 RT 1: 6856-9925 bp Neighborhood of RT #1 [6856, 9925] HTH_26 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 6856-7068 bp Feature: domain Description: HTH_26 Location: 6874-7054 bp Feature: domain Description: HTH_2 6 Location: 6874-7054 bp Feature: gene Location: 7300-7551 bp Feature: gene Location: 7700-9646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8093-8912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8093-8912 bp Feature: domain Description: Intron_maturas2 Location: 8984-9335 bp Feature: domain Description: Intron_maturas2 Location: 8984-9335 bp Feature: domain Description: HNHc Note: nucleases Location: 9470-9611 bp Feature: domain Description: HNHc Note: nucleases Location: 9470-9611 bp Feature: gene Location: 9695-9925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_26 (pfam13443), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: BLME01000211.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_211, whole genome shotgun sequence (1127 bp)
Overview 1 RT 1: 2-1112 bp Neighborhood of RT #1 [2, 1126] RVT-DGRs Avd_like Feature: gene Location: 2-382 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 248-380 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 248-3 80 bp Feature: gene Location: 426-893 bp Feature: gene Location: 836-1126 bp Feature: domain Description: Avd_like Location: 851-1112 bp Feature: domain Description: Avd_like Location: 851-1112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: BLME01000348.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_348, whole genome shotgun sequence (34701 bp)
Overview 1 RT 1: 13220-28246 bp Neighborhood of RT #1 [13220, 28260] DUF3849 YtxK COG4646 RVT_N RVT-GII YkfC RVT_N RVT-GII GIIM ComFC Feature: gene Location: 13220-21586 bp Feature: domain Description: DUF3849 Location: 16142-16493 bp Feature: domain Description: DUF384 9 Location: 1614 2-164 93 bp Feature: domain Description: YtxK Location: 17765-18485 bp Feature: domain Description: YtxK Location: 17765-184 85 bp Feature: domain Description: COG4646 Location: 18602-21203 bp Feature: domain Description: COG4 64 6 Location: 18602-21203 bp Feature: gene Location: 21656-21892 bp Feature: gene Location: 22182-23819 bp Feature: domain Description: RVT_N Location: 22233-22476 bp Feature: domain Description: RVT_N Location: 22233-224 76 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22521-23169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22521-23169 bp Feature: domain Description: YkfC Location: 23355-23574 bp Feature: domain Description: YkfC Location: 23355-23574 bp Feature: gene Location: 23857-24072 bp Feature: gene Location: 24082-24285 bp Feature: gene Location: 24647-26320 bp Feature: domain Description: RVT_N Location: 24692-24935 bp Feature: domain Description: RVT_N Location: 24 692-24 935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24980-25628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 980-25628 bp Feature: domain Description: GIIM Note: maturase Location: 25682-25913 bp Feature: domain Description: GIIM Note: maturase Location: 25682-25913 bp Feature: gene Location: 26321-27529 bp Feature: gene Location: 27607-28260 bp Feature: domain Description: ComFC Location: 27979-28246 bp Feature: domain Description: ComFC Location: 27979-2824 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3849 (pfam12960), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), GIIM (pfam08388), ComFC (COG1040)

Seq: BLME01000404.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_404, whole genome shotgun sequence (11092 bp)
Overview 1 RT 1: 7474-10919 bp Neighborhood of RT #1 [7474, 10990] RVT-DGRs Dam HTH_26 Feature: gene Location: 7474-8064 bp Feature: gene Location: 8152-8325 bp Feature: gene Location: 8372-9556 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8567-9284 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85 67-9284 bp Feature: gene Location: 9862-10617 bp Feature: domain Description: Dam Location: 9868-10615 bp Feature: domain Description: Dam Location: 9868-10615 bp Feature: gene Location: 10718-10990 bp Feature: domain Description: HTH_26 Location: 10733-10919 bp Feature: domain Description: HTH_26 Location: 10733-10919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869), HTH_26 (pfam13443)

Seq: BLME01000454.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_454, whole genome shotgun sequence (1043 bp)
Overview 1 RT 1: 90-1039 bp Neighborhood of RT #1 [90, 1041] RVT-GII Feature: gene Location: 90-326 bp Feature: gene Location: 607-1041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868-1039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86 8-1039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BLME01000584.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_584, whole genome shotgun sequence (2159 bp)
Overview 1 RT 1: 3-1959 bp Neighborhood of RT #1 [3, 2141] Maff2 RVT-GII Feature: gene Location: 3-137 bp Feature: domain Description: Maff2 Location: 9-135 bp Feature: domain Description: Maff2 Location: 9-135 bp Feature: gene Location: 403-591 bp Feature: gene Location: 894-2141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221-1959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221-1959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII

Seq: BLME01000589.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_589, whole genome shotgun sequence (4990 bp)
Overview 1 RT 1: 2-2331 bp Neighborhood of RT #1 [2, 2331] RVT-DGRs Feature: gene Location: 2-349 bp Feature: gene Location: 439-1590 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 649-1309 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 649-1309 bp Feature: gene Location: 1652-1951 bp Feature: gene Location: 1948-2331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: BLME01000643.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_643, whole genome shotgun sequence (25270 bp)
Overview 1 RT 1: 4422-7705 bp Neighborhood of RT #1 [4422, 7705] YkgJ RVT_N RVT-GII GIIM Feature: gene Location: 4422-4871 bp Feature: domain Description: YkgJ Location: 4494-4764 bp Feature: domain Description: YkgJ Location: 449 4-4764 bp Feature: gene Location: 5001-5183 bp Feature: gene Location: 5376-7079 bp Feature: domain Description: RVT_N Location: 5478-5721 bp Feature: domain Description: RVT_N Location: 5478-5721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5766-6426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5766-6426 bp Feature: domain Description: GIIM Note: maturase Location: 6489-6714 bp Feature: domain Description: GIIM Note: maturase Location: 6489 -6714 bp Feature: gene Location: 7027-7467 bp Feature: gene Location: 7532-7705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkgJ (COG0727), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: BLME01000646.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_646, whole genome shotgun sequence (1041 bp)
Overview 1 RT 1: 100-1039 bp Neighborhood of RT #1 [100, 1038] RVT-GII Feature: gene Location: 100-381 bp Feature: gene Location: 415-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 784-1039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 784-10 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BLME01000744.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_744, whole genome shotgun sequence (62659 bp)
Overview 1 RT 1: 8369-12554 bp Neighborhood of RT #1 [8369, 12838] DUF16 RVT-DGRs pfam12571 Feature: gene Location: 8369-8677 bp Feature: domain Description: DUF16 Location: 8384-8576 bp Feature: domain Description: DUF16 Location: 8384-8576 bp Feature: gene Location: 8770-8964 bp Feature: gene Location: 9308-10540 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9605-10223 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9605-10223 bp Feature: gene Location: 10947-12236 bp Feature: gene Location: 12236-12838 bp Feature: domain Description: pfam12571 Location: 12260-12554 bp Feature: domain Description: pfam12571 Location: 12260-12554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF16 (pfam01519), RVT-DGRs, pfam12571 (DUF3751;Phage tail-collar fibre protein)

Seq: BLME01000752.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_752, whole genome shotgun sequence (4034 bp)
Overview 1 RT 1: 38-4033 bp Neighborhood of RT #1 [38, 4033] RVT-Retrons YbjD YbjD Feature: gene Location: 38-1045 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 155-767 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 155-767 bp Feature: gene Location: 1393-3372 bp Feature: domain Description: YbjD Location: 1396-1663 bp Feature: domain Description: YbjD Location: 1396-1663 bp Feature: domain Description: YbjD Location: 2089-2566 bp Feature: domain Description: YbjD Location: 2089-2566 bp Feature: gene Location: 3653-4033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, YbjD (COG3593)

Seq: BLME01000769.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_769, whole genome shotgun sequence (2713 bp)
Overview 1 RT 1: 3-2710 bp Neighborhood of RT #1 [3, 2710] RVT-GII Feature: gene Location: 3-170 bp Feature: gene Location: 193-2082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 511-1252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 511-1252 bp Feature: gene Location: 2070-2393 bp Feature: gene Location: 2537-2710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: BLME01000798.1 Lachnospiraceae bacterium IMSAGC_013 DNA, IMSAGC_013_contig_798, whole genome shotgun sequence (35862 bp)
Overview 1 RT 1: 10665-15549 bp Neighborhood of RT #1 [10665, 15593] TnpV TraG-D_C RVT-GII HNHc T4SS-DNA_transf T4SS-DNA_transf Feature: gene Location: 10665-11048 bp Feature: domain Description: TnpV Location: 10716-11040 bp Feature: domain Description: TnpV Location: 10716-11040 bp Feature: gene Location: 11111-11893 bp Feature: domain Description: TraG-D_C Location: 11534-11834 bp Feature: domain Description: TraG-D_C Location: 11534-11834 bp Feature: gene Location: 12129-14036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12468-13215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12468-13215 bp Feature: domain Description: HNHc Note: nucleases Location: 13782-13920 bp Feature: domain Description: HNHc Note: nucleases Location: 13782-13920 bp Feature: gene Location: 14233-14490 bp Feature: gene Location: 14742-15593 bp Feature: domain Description: T4SS-DNA_transf Location: 15168-15291 bp Feature: domain Description: T4SS-DNA_transf Location: 15168-15291 bp Feature: domain Description: T4SS-DNA_transf Location: 15384-15549 bp Feature: domain Description: T4SS-DNA_transf Location: 15384-15549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), TraG-D_C (pfam12696), RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534)