myRT

myRT report for GCA_011960625.1_ASM1196062v1

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Seq: BLMJ01000070.1 Lachnospiraceae bacterium IMSAGC_019 DNA, IMSAGC_019_contig_70, whole genome shotgun sequence (2923 bp)
Overview 1 RT 1: 173-2866 bp Neighborhood of RT #1 [173, 2922] RVT-GII RVT-GII GIIM ALP_N-acyl_transferase Feature: gene Location: 173-340 bp Feature: gene Location: 393-599 bp Feature: gene Location: 655-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973-1024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973-1 024 bp Feature: gene Location: 1057-1875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1063-1597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 063-1 597 bp Feature: domain Description: GIIM Note: maturase Location: 1654-1843 bp Feature: domain Description: GIIM Note: maturase Location: 1 654-1 843 bp Feature: gene Location: 2060-2197 bp Feature: gene Location: 2260-2922 bp Feature: domain Description: ALP_N-acyl_transferase Location: 2488-2866 bp Feature: domain Description: ALP_N-acyl_transferase Location: 2488-2866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ALP_N-acyl_transferase (cd07571)

Seq: BLMJ01000085.1 Lachnospiraceae bacterium IMSAGC_019 DNA, IMSAGC_019_contig_85, whole genome shotgun sequence (14735 bp)
Overview 1 RT 1: 11968-14415 bp Neighborhood of RT #1 [11968, 14579] COG2405 RVT-GII GIIM Feature: gene Location: 11968-12474 bp Feature: domain Description: COG2405 Location: 11974-12454 bp Feature: domain Description: COG2 405 Location: 11974-12 454 bp Feature: gene Location: 12846-13160 bp Feature: gene Location: 13161-14579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13512-14130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13512 -14130 bp Feature: domain Description: GIIM Note: maturase Location: 14184-14415 bp Feature: domain Description: GIIM Note: maturase Location: 14184-14415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2405 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-GII, GIIM (pfam08388)

Seq: BLMJ01000246.1 Lachnospiraceae bacterium IMSAGC_019 DNA, IMSAGC_019_contig_246, whole genome shotgun sequence (49690 bp)
Overview 1 RT 1: 4724-11044 bp Neighborhood of RT #1 [4724, 11044] TraC-F-type RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4724-7195 bp Feature: domain Description: TraC-F-type Location: 5555-6992 bp Feature: domain Description: TraC-F-type Location: 5555-6992 bp Feature: gene Location: 7258-7809 bp Feature: gene Location: 7962-9794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8226-9057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8226-9057 bp Feature: domain Description: Intron_maturas2 Location: 9129-9441 bp Feature: domain Description: Intron_maturas2 Location: 9129-9441 bp Feature: domain Description: HNHc Note: nucleases Location: 9591-9765 bp Feature: domain Description: HNHc Note: nucleases Location: 9591-9765 bp Feature: gene Location: 10040-10255 bp Feature: gene Location: 10370-11044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)