myRT

myRT report for GCA_011960705.1_ASM1196070v1

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Seq: BLMK01000130.1 Lachnospiraceae bacterium IMSAGC_020 DNA, IMSAGC_020_contig_130, whole genome shotgun sequence (13999 bp)
Overview 1 RT 1: 5149-9001 bp Neighborhood of RT #1 [5149, 9001] CwlO1 RVT-DGRs Feature: gene Location: 5149-5451 bp Feature: domain Description: CwlO1 Location: 5188-5443 bp Feature: domain Description: CwlO1 Location: 51 88-5443 bp Feature: gene Location: 5455-5679 bp Feature: gene Location: 5967-7376 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6300-6954 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6300-6954 bp Feature: gene Location: 7391-7666 bp Feature: gene Location: 7763-9001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlO1 (COG3883), RVT-DGRs

Seq: BLMK01000202.1 Lachnospiraceae bacterium IMSAGC_020 DNA, IMSAGC_020_contig_202, whole genome shotgun sequence (10337 bp)
Overview 1 RT 1: 5831-8285 bp Neighborhood of RT #1 [5831, 8285] Avd_like RVT-DGRs Feature: gene Location: 5831-6226 bp Feature: domain Description: Avd_like Location: 5894-6197 bp Feature: domain Description: Avd_like Location: 5894-6197 bp Feature: gene Location: 6230-6391 bp Feature: gene Location: 6552-7604 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6762-7377 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6762 -7377 bp Feature: gene Location: 7626-7982 bp Feature: gene Location: 8043-8285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: BLMK01000239.1 Lachnospiraceae bacterium IMSAGC_020 DNA, IMSAGC_020_contig_239, whole genome shotgun sequence (1351 bp)
Overview 1 RT 1: 153-1134 bp Neighborhood of RT #1 [153, 1211] RVT-GII GIIM Feature: gene Location: 153-1211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162-852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162-852 bp Feature: domain Description: GIIM Note: maturase Location: 912-1134 bp Feature: domain Description: GIIM Note: maturase Location: 912-113 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BLMK01000324.1 Lachnospiraceae bacterium IMSAGC_020 DNA, IMSAGC_020_contig_324, whole genome shotgun sequence (16188 bp)
Overview 1 RT 1: 41-4017 bp Neighborhood of RT #1 [41, 4070] RVT-GII GIIM LZ_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 41-1345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242-860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 2-860 bp Feature: domain Description: GIIM Note: maturase Location: 914-1124 bp Feature: domain Description: GIIM Note: maturase Location: 914 -1124 bp Feature: gene Location: 1700-1837 bp Feature: gene Location: 2448-4070 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2571-2805 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2571-2805 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3006-3873 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3006-3873 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3894-4017 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3894 -4 017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: BLMK01000368.1 Lachnospiraceae bacterium IMSAGC_020 DNA, IMSAGC_020_contig_368, whole genome shotgun sequence (17505 bp)
Overview 1 RT 1: 3481-7036 bp Neighborhood of RT #1 [3481, 7053] PEBP_bact_arch OAD_beta RVT-GII GrsT SpoU-like_family Transposase_20 Feature: gene Location: 3481-4092 bp Feature: domain Description: PEBP_bact_arch Location: 3664-4081 bp Feature: domain Description: PEBP_bact_arch Location: 3664-4081 bp Feature: gene Location: 4201-4866 bp Feature: domain Description: OAD_beta Location: 4225-4291 bp Feature: domain Description: OAD_beta Location: 4225 -4291 bp Feature: gene Location: 5145-5810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5148-5421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 148-5 421 bp Feature: domain Description: GrsT Location: 5526-5787 bp Feature: domain Description: GrsT Location: 5 5 26-5 787 bp Feature: gene Location: 5875-6663 bp Feature: domain Description: SpoU-like_family Location: 6184-6604 bp Feature: domain Description: SpoU-like_family Location: 6184-6604 bp Feature: gene Location: 6769-7053 bp Feature: domain Description: Transposase_20 Location: 6910-7036 bp Feature: domain Description: Transposase_20 Location: 6910-7036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEBP_bact_arch (cd00865), OAD_beta (pfam03977), RVT-GII, GrsT (COG3208), SpoU-like_family (cd18082), Transposase_20 (pfam02371)

Seq: BLMK01000401.1 Lachnospiraceae bacterium IMSAGC_020 DNA, IMSAGC_020_contig_401, whole genome shotgun sequence (1222 bp)
Overview 1 RT 1: 3-1220 bp Neighborhood of RT #1 [3, 1220] RVT-DGRs Feature: gene Location: 3-998 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 216-780 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 216 -780 bp Feature: gene Location: 1083-1220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: BLMK01000498.1 Lachnospiraceae bacterium IMSAGC_020 DNA, IMSAGC_020_contig_498, whole genome shotgun sequence (9639 bp)
Overview 1 RT 1: 3275-6101 bp Neighborhood of RT #1 [3275, 6101] RVT-GII GIIM Feature: gene Location: 3275-3634 bp Feature: gene Location: 3674-3976 bp Feature: gene Location: 4012-4995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4015-4546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4015-4546 bp Feature: domain Description: GIIM Note: maturase Location: 4600-4831 bp Feature: domain Description: GIIM Note: maturase Location: 4600-4831 bp Feature: gene Location: 5245-5910 bp Feature: gene Location: 5925-6101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BLMK01000502.1 Lachnospiraceae bacterium IMSAGC_020 DNA, IMSAGC_020_contig_502, whole genome shotgun sequence (3085 bp)
Overview 1 RT 1: 440-3082 bp Neighborhood of RT #1 [440, 3084] DEDD_Tnp_IS110 Transposase_20 RVT-GII Feature: gene Location: 440-697 bp Feature: gene Location: 846-2126 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 885-1362 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 8 8 5-1362 bp Feature: domain Description: Transposase_20 Location: 1740-1995 bp Feature: domain Description: Transposase_20 Location: 1740-1995 bp Feature: gene Location: 2566-3084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2875-3082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28 75-308 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)

Seq: BLMK01000553.1 Lachnospiraceae bacterium IMSAGC_020 DNA, IMSAGC_020_contig_553, whole genome shotgun sequence (2688 bp)
Overview 1 RT 1: 151-2687 bp Neighborhood of RT #1 [151, 2687] RVT-GII GIIM Feature: gene Location: 151-717 bp Feature: gene Location: 752-946 bp Feature: gene Location: 1073-2479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424-2042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424-2042 bp Feature: domain Description: GIIM Note: maturase Location: 2099-2324 bp Feature: domain Description: GIIM Note: maturase Location: 209 9 -2324 bp Feature: gene Location: 2493-2687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BLMK01000590.1 Lachnospiraceae bacterium IMSAGC_020 DNA, IMSAGC_020_contig_590, whole genome shotgun sequence (9951 bp)
Overview 1 RT 1: 7827-9537 bp Neighborhood of RT #1 [7827, 9537] RVT-DGRs Feature: gene Location: 7827-7955 bp Feature: gene Location: 8125-8421 bp Feature: gene Location: 8418-9311 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8433-9000 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8433-9000 bp Feature: gene Location: 9250-9537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: BLMK01000655.1 Lachnospiraceae bacterium IMSAGC_020 DNA, IMSAGC_020_contig_655, whole genome shotgun sequence (1551 bp)
Overview 1 RT 1: 1-1312 bp Neighborhood of RT #1 [1, 1446] RVT-GII HNHc Feature: gene Location: 1-1446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-586 bp Feature: domain Description: HNHc Note: nucleases Location: 1183-1312 bp Feature: domain Description: HNHc Note: nucleases Location: 11 83-1312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)