myRT

myRT report for GCA_012027135.1_ASM1202713v1

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Seq: SGXZ01000001.1 Klebsiella pneumoniae strain KPN908 908_contig_1, whole genome shotgun sequence (5449660 bp)
Overview 1 RT 1: 48973-55444 bp 2 RT 2: 246211-250281 bp 3 RT 3: 1529905-1533758 bp 4 RT 4: 4410715-4417583 bp Neighborhood of RT #1 [48973, 55458] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [246211, 250475] RVT-GII PRK10276 Neighborhood of RT #3 [1529905, 1533758] umuC PRK10276 RVT-GII Neighborhood of RT #4 [4410715, 4417585] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 48973-50397 bp Feature: domain Description: SbcB Location: 48979-50395 bp Feature: domain Description: SbcB Location: 48979-50395 bp Feature: gene Location: 50572-51741 bp Feature: domain Description: dacD Location: 50581-51736 bp Feature: domain Description: dacD Location: 50581 -51 736 bp Feature: gene Location: 52259-53746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52664-53354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52664-53354 bp Feature: gene Location: 53828-54301 bp Feature: domain Description: PRK10016 Location: 53831-54290 bp Feature: domain Description: PRK1 001 6 Location: 53831 -54290 bp Feature: gene Location: 54385-55458 bp Feature: domain Description: YccC Location: 54406-55444 bp Feature: domain Description: YccC Location: 54406-55444 bp Feature: gene Location: 246211-246945 bp Feature: gene Location: 247736-247951 bp Feature: gene Location: 248354-249841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248759-249449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248759-249449 bp Feature: gene Location: 249919-250158 bp Feature: gene Location: 250158-250475 bp Feature: domain Description: PRK10276 Location: 250164-250281 bp Feature: domain Description: PRK1 0276 Location: 2501 64-250281 bp Feature: gene Location: 1529905-1531170 bp Feature: domain Description: umuC Location: 1529908-1531168 bp Feature: domain Description: umuC Location: 1 529908-1 531 1 68 bp Feature: gene Location: 1531173-1531592 bp Feature: domain Description: PRK10276 Location: 1531176-1531587 bp Feature: domain Description: PRK1 0276 Location: 1 531 1 76-1 531 587 bp Feature: gene Location: 1531671-1533155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1532073-1532763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 532073-1 532763 bp Feature: gene Location: 1533164-1533331 bp Feature: gene Location: 1533612-1533758 bp Feature: gene Location: 4410715-4411443 bp Feature: domain Description: FimC Location: 4410763-4411426 bp Feature: domain Description: FimC Location: 441 0763-441 1 426 bp Feature: gene Location: 4411475-4414084 bp Feature: domain Description: FimD Location: 4411532-4414073 bp Feature: domain Description: FimD Location: 441 1 532-441 4073 bp Feature: gene Location: 4414084-4416162 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4414492-4414936 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 441 4492-441 4936 bp Feature: gene Location: 4416219-4416659 bp Feature: domain Description: Integrase_1 Location: 4416225-4416441 bp Feature: domain Description: Integrase_1 Location: 441 6225-441 6441 bp Feature: gene Location: 4416920-4417585 bp Feature: domain Description: INT_P4_C Location: 4417025-4417583 bp Feature: domain Description: INT_P4_C Location: 441 7025-441 7583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), FimC (COG3121), FimD (COG3188), RVT-UG4
Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: SGXZ01000004.1 Klebsiella pneumoniae strain KPN908 908_contig_4, whole genome shotgun sequence (269966 bp)
Overview 1 RT 1: 103792-107652 bp Neighborhood of RT #1 [103792, 107652] HHA RVT-GII INT_Cre_C Feature: gene Location: 103792-104043 bp Feature: domain Description: HHA Location: 103840-104023 bp Feature: domain Description: HHA Location: 103840-10402 3 bp Feature: gene Location: 104065-104535 bp Feature: gene Location: 104560-106047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104965-105655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104965-105655 bp Feature: gene Location: 106133-107269 bp Feature: domain Description: INT_Cre_C Location: 106556-107210 bp Feature: domain Description: INT_Cre_C Location: 106556-1072 10 bp Feature: gene Location: 107335-107652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: SGXZ01000005.1 Klebsiella pneumoniae strain KPN908 908_contig_5, whole genome shotgun sequence (239454 bp)
Overview 1 RT 1: 105598-108714 bp Neighborhood of RT #1 [105598, 108714] PRK10276 RVT-GII Feature: gene Location: 105598-106023 bp Feature: domain Description: PRK10276 Location: 105601-106009 bp Feature: domain Description: PRK10276 Location: 105601-106009 bp Feature: gene Location: 106217-106429 bp Feature: gene Location: 106504-107913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106831-107521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10683 1-107521 bp Feature: gene Location: 108147-108377 bp Feature: gene Location: 108436-108714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: SGXZ01000006.1 Klebsiella pneumoniae strain KPN908 908_contig_6, whole genome shotgun sequence (88455 bp)
Overview 1 RT 1: 62229-67251 bp Neighborhood of RT #1 [62229, 67259] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 62229-63194 bp Feature: domain Description: ArdC Location: 62355-63189 bp Feature: domain Description: ArdC Location: 62355-63189 bp Feature: gene Location: 63326-63595 bp Feature: gene Location: 63664-65151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64069-64759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 069-64 759 bp Feature: gene Location: 65176-65988 bp Feature: domain Description: PRK10276 Location: 65608-65971 bp Feature: domain Description: PRK10276 Location: 65608-65971 bp Feature: gene Location: 65988-67259 bp Feature: domain Description: umuC Location: 65991-67251 bp Feature: domain Description: umuC Location: 65991-67251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)