myRT

myRT report for GCA_012027155.1_ASM1202715v1

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Seq: SGYB01000001.1 Klebsiella pneumoniae strain KPN697 697_contig_1, whole genome shotgun sequence (5398862 bp)
Overview 1 RT 1: 722660-726768 bp 2 RT 2: 2006236-2008936 bp 3 RT 3: 2201214-2206095 bp 4 RT 4: 3257159-3264012 bp Neighborhood of RT #1 [722660, 726770] DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [2006236, 2008936] RVT-GII Neighborhood of RT #3 [2201214, 2206100] YccC PRK10016 RVT-GII dacD Neighborhood of RT #4 [3257159, 3264029] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 722660-722902 bp Feature: domain Description: DinI Location: 722711-722891 bp Feature: domain Description: DinI Location: 72271 1 -722891 bp Feature: gene Location: 722917-723063 bp Feature: gene Location: 723517-725004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723922-724612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723922-72461 2 bp Feature: gene Location: 725083-725502 bp Feature: domain Description: PRK10276 Location: 725086-725497 bp Feature: domain Description: PRK1 0276 Location: 725086-725497 bp Feature: gene Location: 725505-726770 bp Feature: domain Description: umuC Location: 725508-726768 bp Feature: domain Description: umuC Location: 725508-726768 bp Feature: gene Location: 2006236-2006502 bp Feature: gene Location: 2006514-2006753 bp Feature: gene Location: 2006831-2008315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2007233-2007923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2007233-2007923 bp Feature: gene Location: 2008324-2008491 bp Feature: gene Location: 2008721-2008936 bp Feature: gene Location: 2201214-2202272 bp Feature: domain Description: YccC Location: 2201220-2202258 bp Feature: domain Description: YccC Location: 2201 220-2202258 bp Feature: gene Location: 2202371-2202844 bp Feature: domain Description: PRK10016 Location: 2202374-2202833 bp Feature: domain Description: PRK1 001 6 Location: 2202374-2202833 bp Feature: gene Location: 2202926-2204410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2203328-2204018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2203328-220401 8 bp Feature: gene Location: 2204419-2204586 bp Feature: gene Location: 2204931-2206100 bp Feature: domain Description: dacD Location: 2204940-2206095 bp Feature: domain Description: dacD Location: 2204940-2206095 bp Feature: gene Location: 3257159-3257824 bp Feature: domain Description: INT_P4_C Location: 3257264-3257822 bp Feature: domain Description: INT_P4_C Location: 3257264-3257822 bp Feature: gene Location: 3258085-3258525 bp Feature: domain Description: Integrase_1 Location: 3258091-3258307 bp Feature: domain Description: Integrase_1 Location: 3258091 -3258307 bp Feature: gene Location: 3258582-3260660 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3258990-3259434 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3258990-3259434 bp Feature: gene Location: 3260660-3263269 bp Feature: domain Description: FimD Location: 3260717-3263258 bp Feature: domain Description: FimD Location: 326071 7-3263258 bp Feature: gene Location: 3263301-3264029 bp Feature: domain Description: FimC Location: 3263349-3264012 bp Feature: domain Description: FimC Location: 3263349-326401 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4
FimD (COG3188), FimC (COG3121)

Seq: SGYB01000003.1 Klebsiella pneumoniae strain KPN697 697_contig_3, whole genome shotgun sequence (251627 bp)
Overview 1 RT 1: 1444-5304 bp 2 RT 2: 245338-249198 bp Neighborhood of RT #1 [1444, 5304] HHA RVT-GII INT_Cre_C Neighborhood of RT #2 [245338, 249198] HHA RVT-GII INT_Cre_C Feature: gene Location: 1444-1695 bp Feature: domain Description: HHA Location: 1492-1675 bp Feature: domain Description: HHA Location: 1492 -1675 bp Feature: gene Location: 1717-2187 bp Feature: gene Location: 2212-3699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2617-3307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 617-3307 bp Feature: gene Location: 3785-4921 bp Feature: domain Description: INT_Cre_C Location: 4208-4862 bp Feature: domain Description: INT_Cre_C Location: 42 08-4862 bp Feature: gene Location: 4987-5304 bp Feature: gene Location: 245338-245589 bp Feature: domain Description: HHA Location: 245386-245569 bp Feature: domain Description: HHA Location: 2 45386-2 45569 bp Feature: gene Location: 245611-246081 bp Feature: gene Location: 246106-247593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246511-247201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 46511-2 472 01 bp Feature: gene Location: 247679-248815 bp Feature: domain Description: INT_Cre_C Location: 248102-248756 bp Feature: domain Description: INT_Cre_C Location: 2 48102 -2 48756 bp Feature: gene Location: 248881-249198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: SGYB01000004.1 Klebsiella pneumoniae strain KPN697 697_contig_4, whole genome shotgun sequence (117201 bp)
Overview 1 RT 1: 66698-69946 bp Neighborhood of RT #1 [66698, 69960] RVT-GII PRK10276 Feature: gene Location: 66698-66919 bp Feature: gene Location: 67181-67411 bp Feature: gene Location: 67645-69132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68050-68740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68050-68740 bp Feature: gene Location: 69138-69305 bp Feature: gene Location: 69535-69960 bp Feature: domain Description: PRK10276 Location: 69538-69946 bp Feature: domain Description: PRK10276 Location: 6953 8-69946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: SGYB01000005.1 Klebsiella pneumoniae strain KPN697 697_contig_5, whole genome shotgun sequence (88205 bp)
Overview 1 RT 1: 34055-39080 bp Neighborhood of RT #1 [34055, 39085] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 34055-35326 bp Feature: domain Description: umuC Location: 34058-35318 bp Feature: domain Description: umuC Location: 34 058-35318 bp Feature: gene Location: 35326-36138 bp Feature: domain Description: PRK10276 Location: 35758-36121 bp Feature: domain Description: PRK10276 Location: 35758-36121 bp Feature: gene Location: 36163-37650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36568-37258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36568-37258 bp Feature: gene Location: 37719-37988 bp Feature: gene Location: 38120-39085 bp Feature: domain Description: ArdC Location: 38246-39080 bp Feature: domain Description: ArdC Location: 3824 6-39080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)