myRT

myRT report for GCA_012027175.1_ASM1202717v1

Download annotations/find similar RTs

Seq: SGYD01000001.1 Klebsiella pneumoniae strain KPN674 674_contig_1, whole genome shotgun sequence (5435075 bp)
Overview 1 RT 1: 500196-504304 bp 2 RT 2: 1783758-1786458 bp 3 RT 3: 1978727-1983608 bp 4 RT 4: 3034659-3041512 bp Neighborhood of RT #1 [500196, 504306] DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [1783758, 1786458] RVT-GII Neighborhood of RT #3 [1978727, 1983613] YccC PRK10016 RVT-GII dacD Neighborhood of RT #4 [3034659, 3041529] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 500196-500438 bp Feature: domain Description: DinI Location: 500247-500427 bp Feature: domain Description: DinI Location: 500247-500427 bp Feature: gene Location: 500453-500599 bp Feature: gene Location: 501053-502540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501458-502148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 458-5021 48 bp Feature: gene Location: 502619-503038 bp Feature: domain Description: PRK10276 Location: 502622-503033 bp Feature: domain Description: PRK1 0276 Location: 502622-503033 bp Feature: gene Location: 503041-504306 bp Feature: domain Description: umuC Location: 503044-504304 bp Feature: domain Description: umuC Location: 503044-504304 bp Feature: gene Location: 1783758-1784024 bp Feature: gene Location: 1784036-1784275 bp Feature: gene Location: 1784353-1785837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1784755-1785445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 784755-1 785445 bp Feature: gene Location: 1785846-1786013 bp Feature: gene Location: 1786243-1786458 bp Feature: gene Location: 1978727-1979785 bp Feature: domain Description: YccC Location: 1978733-1979771 bp Feature: domain Description: YccC Location: 1 978733-1 979771 bp Feature: gene Location: 1979884-1980357 bp Feature: domain Description: PRK10016 Location: 1979887-1980346 bp Feature: domain Description: PRK1 001 6 Location: 1 979887-1 980346 bp Feature: gene Location: 1980439-1981923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1980841-1981531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 980841 -1 981 531 bp Feature: gene Location: 1981932-1982099 bp Feature: gene Location: 1982444-1983613 bp Feature: domain Description: dacD Location: 1982453-1983608 bp Feature: domain Description: dacD Location: 1 982453-1 983608 bp Feature: gene Location: 3034659-3035324 bp Feature: domain Description: INT_P4_C Location: 3034764-3035322 bp Feature: domain Description: INT_P4_C Location: 3034764-3035322 bp Feature: gene Location: 3035585-3036025 bp Feature: domain Description: Integrase_1 Location: 3035591-3035807 bp Feature: domain Description: Integrase_1 Location: 3035591 -3035807 bp Feature: gene Location: 3036082-3038160 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3036490-3036934 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3036490-3036934 bp Feature: gene Location: 3038160-3040769 bp Feature: domain Description: FimD Location: 3038217-3040758 bp Feature: domain Description: FimD Location: 303821 7-3040758 bp Feature: gene Location: 3040801-3041529 bp Feature: domain Description: FimC Location: 3040849-3041512 bp Feature: domain Description: FimC Location: 3040849-3041 51 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4
FimD (COG3188), FimC (COG3121)

Seq: SGYD01000002.1 Klebsiella pneumoniae strain KPN674 674_contig_2, whole genome shotgun sequence (284126 bp)
Overview 1 RT 1: 135766-139606 bp Neighborhood of RT #1 [135766, 139626] INT_Cre_C RVT-GII HHA Feature: gene Location: 135766-136083 bp Feature: gene Location: 136149-137285 bp Feature: domain Description: INT_Cre_C Location: 136572-137226 bp Feature: domain Description: INT_Cre_C Location: 136572 -1372 2 6 bp Feature: gene Location: 137371-138858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137776-138466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137776-138466 bp Feature: gene Location: 138883-139353 bp Feature: gene Location: 139375-139626 bp Feature: domain Description: HHA Location: 139423-139606 bp Feature: domain Description: HHA Location: 13942 3-139606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: SGYD01000004.1 Klebsiella pneumoniae strain KPN674 674_contig_4, whole genome shotgun sequence (113323 bp)
Overview 1 RT 1: 38085-41201 bp Neighborhood of RT #1 [38085, 41201] PRK10276 RVT-GII Feature: gene Location: 38085-38510 bp Feature: domain Description: PRK10276 Location: 38088-38496 bp Feature: domain Description: PRK10276 Location: 3 8088-3 8496 bp Feature: gene Location: 38704-38916 bp Feature: gene Location: 38991-40400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39318-40008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 93 18-40008 bp Feature: gene Location: 40634-40864 bp Feature: gene Location: 40923-41201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: SGYD01000006.1 Klebsiella pneumoniae strain KPN674 674_contig_6, whole genome shotgun sequence (86917 bp)
Overview 1 RT 1: 47076-52098 bp Neighborhood of RT #1 [47076, 52106] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 47076-48041 bp Feature: domain Description: ArdC Location: 47202-48036 bp Feature: domain Description: ArdC Location: 4 7202-4 8036 bp Feature: gene Location: 48173-48442 bp Feature: gene Location: 48511-49998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48916-49606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 8916-4 9606 bp Feature: gene Location: 50023-50835 bp Feature: domain Description: PRK10276 Location: 50455-50818 bp Feature: domain Description: PRK10276 Location: 504 55-50818 bp Feature: gene Location: 50835-52106 bp Feature: domain Description: umuC Location: 50838-52098 bp Feature: domain Description: umuC Location: 50838-52098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)