myRT

myRT report for GCA_012027185.1_ASM1202718v1

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Seq: SGYE01000003.1 Klebsiella pneumoniae strain KPN673 673_contig_3, whole genome shotgun sequence (5432007 bp)
Overview 1 RT 1: 784675-791146 bp 2 RT 2: 981910-985980 bp 3 RT 3: 2265548-2269401 bp 4 RT 4: 5146249-5153117 bp Neighborhood of RT #1 [784675, 791160] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [981910, 986174] RVT-GII PRK10276 Neighborhood of RT #3 [2265548, 2269401] umuC PRK10276 RVT-GII Neighborhood of RT #4 [5146249, 5153119] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 784675-786099 bp Feature: domain Description: SbcB Location: 784681-786097 bp Feature: domain Description: SbcB Location: 784681 -786097 bp Feature: gene Location: 786274-787443 bp Feature: domain Description: dacD Location: 786283-787438 bp Feature: domain Description: dacD Location: 786283-787438 bp Feature: gene Location: 787961-789448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788366-789056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788366-789056 bp Feature: gene Location: 789530-790003 bp Feature: domain Description: PRK10016 Location: 789533-789992 bp Feature: domain Description: PRK1 001 6 Location: 789533-789992 bp Feature: gene Location: 790087-791160 bp Feature: domain Description: YccC Location: 790108-791146 bp Feature: domain Description: YccC Location: 7901 08-791 1 46 bp Feature: gene Location: 981910-982644 bp Feature: gene Location: 983435-983650 bp Feature: gene Location: 984053-985540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984458-985148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984458-9851 48 bp Feature: gene Location: 985618-985857 bp Feature: gene Location: 985857-986174 bp Feature: domain Description: PRK10276 Location: 985863-985980 bp Feature: domain Description: PRK1 0276 Location: 985863-985980 bp Feature: gene Location: 2265548-2266813 bp Feature: domain Description: umuC Location: 2265551-2266811 bp Feature: domain Description: umuC Location: 2265551 -226681 1 bp Feature: gene Location: 2266816-2267235 bp Feature: domain Description: PRK10276 Location: 2266819-2267230 bp Feature: domain Description: PRK1 0276 Location: 226681 9-2267230 bp Feature: gene Location: 2267314-2268798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267716-2268406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226771 6-2268406 bp Feature: gene Location: 2268807-2268974 bp Feature: gene Location: 2269255-2269401 bp Feature: gene Location: 5146249-5146977 bp Feature: domain Description: FimC Location: 5146297-5146960 bp Feature: domain Description: FimC Location: 51 46297-51 46960 bp Feature: gene Location: 5147009-5149618 bp Feature: domain Description: FimD Location: 5147066-5149607 bp Feature: domain Description: FimD Location: 51 47066-51 49607 bp Feature: gene Location: 5149618-5151696 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5150026-5150470 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 51 50026-51 50470 bp Feature: gene Location: 5151753-5152193 bp Feature: domain Description: Integrase_1 Location: 5151759-5151975 bp Feature: domain Description: Integrase_1 Location: 51 51 759-51 51 975 bp Feature: gene Location: 5152454-5153119 bp Feature: domain Description: INT_P4_C Location: 5152559-5153117 bp Feature: domain Description: INT_P4_C Location: 51 52559-51 531 1 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), FimC (COG3121), FimD (COG3188), RVT-UG4
Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: SGYE01000004.1 Klebsiella pneumoniae strain KPN673 673_contig_4, whole genome shotgun sequence (277381 bp)
Overview 1 RT 1: 22875-26735 bp Neighborhood of RT #1 [22875, 26735] HHA RVT-GII INT_Cre_C Feature: gene Location: 22875-23126 bp Feature: domain Description: HHA Location: 22923-23106 bp Feature: domain Description: HHA Location: 2 2 92 3-2 3106 bp Feature: gene Location: 23148-23618 bp Feature: gene Location: 23643-25130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24048-24738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4048-2 4738 bp Feature: gene Location: 25216-26352 bp Feature: domain Description: INT_Cre_C Location: 25639-26293 bp Feature: domain Description: INT_Cre_C Location: 2 5639-2 62 93 bp Feature: gene Location: 26418-26735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: SGYE01000005.1 Klebsiella pneumoniae strain KPN673 673_contig_5, whole genome shotgun sequence (211698 bp)
Overview 1 RT 1: 168905-172021 bp Neighborhood of RT #1 [168905, 172021] PRK10276 RVT-GII Feature: gene Location: 168905-169330 bp Feature: domain Description: PRK10276 Location: 168908-169316 bp Feature: domain Description: PRK10276 Location: 168908-1693 16 bp Feature: gene Location: 169524-169736 bp Feature: gene Location: 169811-171220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170138-170828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17013 8-170828 bp Feature: gene Location: 171136-171684 bp Feature: gene Location: 171743-172021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: SGYE01000006.1 Klebsiella pneumoniae strain KPN673 673_contig_6, whole genome shotgun sequence (84351 bp)
Overview 1 RT 1: 48742-53764 bp Neighborhood of RT #1 [48742, 53772] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 48742-49707 bp Feature: domain Description: ArdC Location: 48868-49702 bp Feature: domain Description: ArdC Location: 4 8868-4 9702 bp Feature: gene Location: 49839-50108 bp Feature: gene Location: 50177-51664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50582-51272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50582-51272 bp Feature: gene Location: 51689-52501 bp Feature: domain Description: PRK10276 Location: 52121-52484 bp Feature: domain Description: PRK10276 Location: 52121-524 84 bp Feature: gene Location: 52501-53772 bp Feature: domain Description: umuC Location: 52504-53764 bp Feature: domain Description: umuC Location: 52504 -53764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)