myRT

myRT report for GCA_012027195.1_ASM1202719v1

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Seq: SGYC01000001.1 Klebsiella pneumoniae strain KPN902 902_contig_1, whole genome shotgun sequence (5432039 bp)
Overview 1 RT 1: 163916-167769 bp 2 RT 2: 3044322-3051190 bp 3 RT 3: 4100653-4107124 bp 4 RT 4: 4297889-4301959 bp Neighborhood of RT #1 [163916, 167769] umuC PRK10276 RVT-GII Neighborhood of RT #2 [3044322, 3051192] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Neighborhood of RT #3 [4100653, 4107138] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [4297889, 4302153] RVT-GII PRK10276 Feature: gene Location: 163916-165181 bp Feature: domain Description: umuC Location: 163919-165179 bp Feature: domain Description: umuC Location: 1 6391 9-1 651 79 bp Feature: gene Location: 165184-165603 bp Feature: domain Description: PRK10276 Location: 165187-165598 bp Feature: domain Description: PRK1 0276 Location: 1 651 87-1 65598 bp Feature: gene Location: 165682-167166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166084-166774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 66084-1 66774 bp Feature: gene Location: 167175-167342 bp Feature: gene Location: 167623-167769 bp Feature: gene Location: 3044322-3045050 bp Feature: domain Description: FimC Location: 3044370-3045033 bp Feature: domain Description: FimC Location: 3044370-3045033 bp Feature: gene Location: 3045082-3047691 bp Feature: domain Description: FimD Location: 3045139-3047680 bp Feature: domain Description: FimD Location: 30451 39-3047680 bp Feature: gene Location: 3047691-3049769 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3048099-3048543 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3048099-3048543 bp Feature: gene Location: 3049826-3050266 bp Feature: domain Description: Integrase_1 Location: 3049832-3050048 bp Feature: domain Description: Integrase_1 Location: 3049832-3050048 bp Feature: gene Location: 3050527-3051192 bp Feature: domain Description: INT_P4_C Location: 3050632-3051190 bp Feature: domain Description: INT_P4_C Location: 3050632-3051 1 90 bp Feature: gene Location: 4100653-4102077 bp Feature: domain Description: SbcB Location: 4100659-4102075 bp Feature: domain Description: SbcB Location: 41 00659-41 02075 bp Feature: gene Location: 4102252-4103421 bp Feature: domain Description: dacD Location: 4102261-4103416 bp Feature: domain Description: dacD Location: 41 02261 -41 0341 6 bp Feature: gene Location: 4103939-4105426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4104344-4105034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 04344-41 05034 bp Feature: gene Location: 4105508-4105981 bp Feature: domain Description: PRK10016 Location: 4105511-4105970 bp Feature: domain Description: PRK1 001 6 Location: 41 0551 1 -41 05970 bp Feature: gene Location: 4106065-4107138 bp Feature: domain Description: YccC Location: 4106086-4107124 bp Feature: domain Description: YccC Location: 41 06086-41 071 24 bp Feature: gene Location: 4297889-4298623 bp Feature: gene Location: 4299414-4299629 bp Feature: gene Location: 4300032-4301519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4300437-4301127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4300437-4301 1 27 bp Feature: gene Location: 4301597-4301836 bp Feature: gene Location: 4301836-4302153 bp Feature: domain Description: PRK10276 Location: 4301842-4301959 bp Feature: domain Description: PRK1 0276 Location: 4301 842-4301 959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801), SbcB (COG2925), dacD (PRK11397)
PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)

Seq: SGYC01000002.1 Klebsiella pneumoniae strain KPN902 902_contig_2, whole genome shotgun sequence (274149 bp)
Overview 1 RT 1: 210677-214517 bp Neighborhood of RT #1 [210677, 214537] INT_Cre_C RVT-GII HHA Feature: gene Location: 210677-210994 bp Feature: gene Location: 211060-212196 bp Feature: domain Description: INT_Cre_C Location: 211483-212137 bp Feature: domain Description: INT_Cre_C Location: 2 11483-2 12 137 bp Feature: gene Location: 212282-213769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212687-213377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 687-2 13377 bp Feature: gene Location: 213794-214264 bp Feature: gene Location: 214286-214537 bp Feature: domain Description: HHA Location: 214334-214517 bp Feature: domain Description: HHA Location: 2 14334-2 14517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: SGYC01000003.1 Klebsiella pneumoniae strain KPN902 902_contig_3, whole genome shotgun sequence (117648 bp)
Overview 1 RT 1: 43184-46300 bp Neighborhood of RT #1 [43184, 46300] PRK10276 RVT-GII Feature: gene Location: 43184-43609 bp Feature: domain Description: PRK10276 Location: 43187-43595 bp Feature: domain Description: PRK10276 Location: 43 187-43 595 bp Feature: gene Location: 43803-44015 bp Feature: gene Location: 44090-45499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44417-45107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44417-45107 bp Feature: gene Location: 45733-45963 bp Feature: gene Location: 46022-46300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: SGYC01000004.1 Klebsiella pneumoniae strain KPN902 902_contig_4, whole genome shotgun sequence (85337 bp)
Overview 1 RT 1: 46958-51983 bp Neighborhood of RT #1 [46958, 51988] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 46958-48229 bp Feature: domain Description: umuC Location: 46961-48221 bp Feature: domain Description: umuC Location: 4 6961-4 8221 bp Feature: gene Location: 48229-49041 bp Feature: domain Description: PRK10276 Location: 48661-49024 bp Feature: domain Description: PRK10276 Location: 4 8661-4 9024 bp Feature: gene Location: 49066-50553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49471-50161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 94 71-50161 bp Feature: gene Location: 50622-50891 bp Feature: gene Location: 51023-51988 bp Feature: domain Description: ArdC Location: 51149-51983 bp Feature: domain Description: ArdC Location: 5114 9-51983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)