myRT

myRT report for GCA_012027215.1_ASM1202721v1

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Seq: SGYA01000001.1 Klebsiella pneumoniae strain KPN1014 1014_contig_1, whole genome shotgun sequence (5437378 bp)
Overview 1 RT 1: 821950-825803 bp 2 RT 2: 3702761-3709629 bp 3 RT 3: 4759091-4765562 bp 4 RT 4: 4956329-4960399 bp Neighborhood of RT #1 [821950, 825803] umuC PRK10276 RVT-GII Neighborhood of RT #2 [3702761, 3709631] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Neighborhood of RT #3 [4759091, 4765576] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [4956329, 4960593] RVT-GII PRK10276 Feature: gene Location: 821950-823215 bp Feature: domain Description: umuC Location: 821953-823213 bp Feature: domain Description: umuC Location: 821 953-82321 3 bp Feature: gene Location: 823218-823637 bp Feature: domain Description: PRK10276 Location: 823221-823632 bp Feature: domain Description: PRK1 0276 Location: 823221 -823632 bp Feature: gene Location: 823716-825200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824118-824808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8241 1 8-824808 bp Feature: gene Location: 825209-825376 bp Feature: gene Location: 825657-825803 bp Feature: gene Location: 3702761-3703489 bp Feature: domain Description: FimC Location: 3702809-3703472 bp Feature: domain Description: FimC Location: 3702809-3703472 bp Feature: gene Location: 3703521-3706130 bp Feature: domain Description: FimD Location: 3703578-3706119 bp Feature: domain Description: FimD Location: 3703578-37061 1 9 bp Feature: gene Location: 3706130-3708208 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3706538-3706982 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3706538-3706982 bp Feature: gene Location: 3708265-3708705 bp Feature: domain Description: Integrase_1 Location: 3708271-3708487 bp Feature: domain Description: Integrase_1 Location: 3708271 -3708487 bp Feature: gene Location: 3708966-3709631 bp Feature: domain Description: INT_P4_C Location: 3709071-3709629 bp Feature: domain Description: INT_P4_C Location: 3709071 -3709629 bp Feature: gene Location: 4759091-4760515 bp Feature: domain Description: SbcB Location: 4759097-4760513 bp Feature: domain Description: SbcB Location: 4759097-476051 3 bp Feature: gene Location: 4760690-4761859 bp Feature: domain Description: dacD Location: 4760699-4761854 bp Feature: domain Description: dacD Location: 4760699-4761 854 bp Feature: gene Location: 4762377-4763864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4762782-4763472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4762782-4763472 bp Feature: gene Location: 4763946-4764419 bp Feature: domain Description: PRK10016 Location: 4763949-4764408 bp Feature: domain Description: PRK1 001 6 Location: 4763949-4764408 bp Feature: gene Location: 4764503-4765576 bp Feature: domain Description: YccC Location: 4764524-4765562 bp Feature: domain Description: YccC Location: 4764524-4765562 bp Feature: gene Location: 4956329-4957063 bp Feature: gene Location: 4957854-4958069 bp Feature: gene Location: 4958472-4959959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4958877-4959567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4958877-4959567 bp Feature: gene Location: 4960037-4960276 bp Feature: gene Location: 4960276-4960593 bp Feature: domain Description: PRK10276 Location: 4960282-4960399 bp Feature: domain Description: PRK1 0276 Location: 4960282-4960399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801), SbcB (COG2925), dacD (PRK11397)
PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)

Seq: SGYA01000002.1 Klebsiella pneumoniae strain KPN1014 1014_contig_2, whole genome shotgun sequence (274988 bp)
Overview 1 RT 1: 238162-242022 bp Neighborhood of RT #1 [238162, 242022] HHA RVT-GII INT_Cre_C Feature: gene Location: 238162-238413 bp Feature: domain Description: HHA Location: 238210-238393 bp Feature: domain Description: HHA Location: 2 382 10-2 38393 bp Feature: gene Location: 238435-238905 bp Feature: gene Location: 238930-240417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239335-240025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 39335-2 4002 5 bp Feature: gene Location: 240503-241639 bp Feature: domain Description: INT_Cre_C Location: 240926-241580 bp Feature: domain Description: INT_Cre_C Location: 2 4092 6-2 41580 bp Feature: gene Location: 241705-242022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: SGYA01000003.1 Klebsiella pneumoniae strain KPN1014 1014_contig_3, whole genome shotgun sequence (229368 bp)
Overview 1 RT 1: 88335-91451 bp Neighborhood of RT #1 [88335, 91451] PRK10276 RVT-GII Feature: gene Location: 88335-88760 bp Feature: domain Description: PRK10276 Location: 88338-88746 bp Feature: domain Description: PRK10276 Location: 883 3 8-88746 bp Feature: gene Location: 88954-89166 bp Feature: gene Location: 89241-90650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89568-90258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89568-90258 bp Feature: gene Location: 90884-91114 bp Feature: gene Location: 91173-91451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: SGYA01000004.1 Klebsiella pneumoniae strain KPN1014 1014_contig_4, whole genome shotgun sequence (83072 bp)
Overview 1 RT 1: 3-1437 bp 2 RT 2: 67131-72156 bp Neighborhood of RT #1 [3, 1437] RVT-GII RVT-GII group_II_RT_mat Neighborhood of RT #2 [67131, 72161] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 3-206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-14 7 bp Feature: gene Location: 248-619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254-587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254 -587 bp Feature: gene Location: 770-1099 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 776-965 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 776-965 bp Feature: gene Location: 1168-1437 bp Feature: gene Location: 67131-68402 bp Feature: domain Description: umuC Location: 67134-68394 bp Feature: domain Description: umuC Location: 67134 -68394 bp Feature: gene Location: 68402-69085 bp Feature: domain Description: PRK10276 Location: 68705-69068 bp Feature: domain Description: PRK10276 Location: 68705-69068 bp Feature: gene Location: 69239-70726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69644-70334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6964 4 -70334 bp Feature: gene Location: 70795-71064 bp Feature: gene Location: 71196-72161 bp Feature: domain Description: ArdC Location: 71322-72156 bp Feature: domain Description: ArdC Location: 71322-72156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), ArdC (COG4227)