myRT

myRT report for GCA_012027245.1_ASM1202724v1

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Seq: SGYF01000001.1 Klebsiella pneumoniae strain KPN671 671_contig_1, whole genome shotgun sequence (5425684 bp)
Overview 1 RT 1: 83460-87313 bp 2 RT 2: 2964207-2971074 bp 3 RT 3: 4020513-4026984 bp 4 RT 4: 4217744-4221814 bp Neighborhood of RT #1 [83460, 87313] umuC PRK10276 RVT-GII Neighborhood of RT #2 [2964207, 2971076] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Neighborhood of RT #3 [4020513, 4026998] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [4217744, 4222008] RVT-GII PRK10276 Feature: gene Location: 83460-84725 bp Feature: domain Description: umuC Location: 83463-84723 bp Feature: domain Description: umuC Location: 83463-84723 bp Feature: gene Location: 84728-85147 bp Feature: domain Description: PRK10276 Location: 84731-85142 bp Feature: domain Description: PRK1 0276 Location: 84731 -851 42 bp Feature: gene Location: 85226-86710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85628-86318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85628-8631 8 bp Feature: gene Location: 86719-86886 bp Feature: gene Location: 87167-87313 bp Feature: gene Location: 2964207-2964935 bp Feature: domain Description: FimC Location: 2964255-2964918 bp Feature: domain Description: FimC Location: 2964255-296491 8 bp Feature: gene Location: 2964967-2967576 bp Feature: domain Description: FimD Location: 2965024-2967565 bp Feature: domain Description: FimD Location: 2965024-2967565 bp Feature: gene Location: 2967576-2969654 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2967984-2968428 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2967984-2968428 bp Feature: gene Location: 2969711-2970151 bp Feature: domain Description: Integrase_1 Location: 2969717-2969933 bp Feature: domain Description: Integrase_1 Location: 296971 7-2969933 bp Feature: gene Location: 2970411-2971076 bp Feature: domain Description: INT_P4_C Location: 2970516-2971074 bp Feature: domain Description: INT_P4_C Location: 297051 6-2971 074 bp Feature: gene Location: 4020513-4021937 bp Feature: domain Description: SbcB Location: 4020519-4021935 bp Feature: domain Description: SbcB Location: 402051 9-4021 935 bp Feature: gene Location: 4022112-4023281 bp Feature: domain Description: dacD Location: 4022121-4023276 bp Feature: domain Description: dacD Location: 40221 21 -4023276 bp Feature: gene Location: 4023799-4025286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4024204-4024894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4024204-4024894 bp Feature: gene Location: 4025368-4025841 bp Feature: domain Description: PRK10016 Location: 4025371-4025830 bp Feature: domain Description: PRK1 001 6 Location: 4025371 -4025830 bp Feature: gene Location: 4025925-4026998 bp Feature: domain Description: YccC Location: 4025946-4026984 bp Feature: domain Description: YccC Location: 4025946-4026984 bp Feature: gene Location: 4217744-4218478 bp Feature: gene Location: 4219269-4219484 bp Feature: gene Location: 4219887-4221374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4220292-4220982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4220292-4220982 bp Feature: gene Location: 4221452-4221691 bp Feature: gene Location: 4221691-4222008 bp Feature: domain Description: PRK10276 Location: 4221697-4221814 bp Feature: domain Description: PRK1 0276 Location: 4221 697-4221 81 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801), SbcB (COG2925), dacD (PRK11397)
PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)

Seq: SGYF01000002.1 Klebsiella pneumoniae strain KPN671 671_contig_2, whole genome shotgun sequence (266876 bp)
Overview 1 RT 1: 142621-146461 bp Neighborhood of RT #1 [142621, 146481] INT_Cre_C RVT-GII HHA Feature: gene Location: 142621-142938 bp Feature: gene Location: 143004-144140 bp Feature: domain Description: INT_Cre_C Location: 143427-144081 bp Feature: domain Description: INT_Cre_C Location: 14342 7-144081 bp Feature: gene Location: 144226-145713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144631-145321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144631-14532 1 bp Feature: gene Location: 145738-146208 bp Feature: gene Location: 146230-146481 bp Feature: domain Description: HHA Location: 146278-146461 bp Feature: domain Description: HHA Location: 1462 78-146461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: SGYF01000003.1 Klebsiella pneumoniae strain KPN671 671_contig_3, whole genome shotgun sequence (113864 bp)
Overview 1 RT 1: 27832-31080 bp Neighborhood of RT #1 [27832, 31094] RVT-GII PRK10276 Feature: gene Location: 27832-28053 bp Feature: gene Location: 28315-28545 bp Feature: gene Location: 28779-30266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29184-29874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29184-29874 bp Feature: gene Location: 30272-30439 bp Feature: gene Location: 30669-31094 bp Feature: domain Description: PRK10276 Location: 30672-31080 bp Feature: domain Description: PRK10276 Location: 3 0672-3 1080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: SGYF01000004.1 Klebsiella pneumoniae strain KPN671 671_contig_4, whole genome shotgun sequence (77501 bp)
Overview 1 RT 1: 33739-38761 bp Neighborhood of RT #1 [33739, 38769] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 33739-34704 bp Feature: domain Description: ArdC Location: 33865-34699 bp Feature: domain Description: ArdC Location: 33865-34 699 bp Feature: gene Location: 34836-35105 bp Feature: gene Location: 35174-36661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35579-36269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35579-36269 bp Feature: gene Location: 36686-37498 bp Feature: domain Description: PRK10276 Location: 37118-37481 bp Feature: domain Description: PRK10276 Location: 37118-374 81 bp Feature: gene Location: 37498-38769 bp Feature: domain Description: umuC Location: 37501-38761 bp Feature: domain Description: umuC Location: 37501-38761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)