myRT

myRT report for GCA_012027275.1_ASM1202727v1

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Seq: SGYG01000001.1 Klebsiella pneumoniae strain KPN638 638_contig_1, whole genome shotgun sequence (5430214 bp)
Overview 1 RT 1: 372500-376608 bp 2 RT 2: 1656078-1658778 bp 3 RT 3: 1851056-1855937 bp 4 RT 4: 2906999-2913852 bp Neighborhood of RT #1 [372500, 376610] DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [1656078, 1658778] RVT-GII Neighborhood of RT #3 [1851056, 1855942] YccC PRK10016 RVT-GII dacD Neighborhood of RT #4 [2906999, 2913869] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 372500-372742 bp Feature: domain Description: DinI Location: 372551-372731 bp Feature: domain Description: DinI Location: 372551 -372731 bp Feature: gene Location: 372757-372903 bp Feature: gene Location: 373357-374844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373762-374452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373762-374452 bp Feature: gene Location: 374923-375342 bp Feature: domain Description: PRK10276 Location: 374926-375337 bp Feature: domain Description: PRK1 0276 Location: 374926-375337 bp Feature: gene Location: 375345-376610 bp Feature: domain Description: umuC Location: 375348-376608 bp Feature: domain Description: umuC Location: 375348-376608 bp Feature: gene Location: 1656078-1656344 bp Feature: gene Location: 1656356-1656595 bp Feature: gene Location: 1656673-1658157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1657075-1657765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 657075-1 657765 bp Feature: gene Location: 1658166-1658333 bp Feature: gene Location: 1658563-1658778 bp Feature: gene Location: 1851056-1852114 bp Feature: domain Description: YccC Location: 1851062-1852100 bp Feature: domain Description: YccC Location: 1 851 062-1 8521 00 bp Feature: gene Location: 1852213-1852686 bp Feature: domain Description: PRK10016 Location: 1852216-1852675 bp Feature: domain Description: PRK1 001 6 Location: 1 85221 6-1 852675 bp Feature: gene Location: 1852768-1854252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853170-1853860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8531 70-1 853860 bp Feature: gene Location: 1854261-1854428 bp Feature: gene Location: 1854773-1855942 bp Feature: domain Description: dacD Location: 1854782-1855937 bp Feature: domain Description: dacD Location: 1 854782-1 855937 bp Feature: gene Location: 2906999-2907664 bp Feature: domain Description: INT_P4_C Location: 2907104-2907662 bp Feature: domain Description: INT_P4_C Location: 29071 04-2907662 bp Feature: gene Location: 2907925-2908365 bp Feature: domain Description: Integrase_1 Location: 2907931-2908147 bp Feature: domain Description: Integrase_1 Location: 2907931 -29081 47 bp Feature: gene Location: 2908422-2910500 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2908830-2909274 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2908830-2909274 bp Feature: gene Location: 2910500-2913109 bp Feature: domain Description: FimD Location: 2910557-2913098 bp Feature: domain Description: FimD Location: 291 0557-291 3098 bp Feature: gene Location: 2913141-2913869 bp Feature: domain Description: FimC Location: 2913189-2913852 bp Feature: domain Description: FimC Location: 291 31 89-291 3852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4
FimD (COG3188), FimC (COG3121)

Seq: SGYG01000002.1 Klebsiella pneumoniae strain KPN638 638_contig_2, whole genome shotgun sequence (269991 bp)
Overview 1 RT 1: 18245-22085 bp Neighborhood of RT #1 [18245, 22105] INT_Cre_C RVT-GII HHA Feature: gene Location: 18245-18562 bp Feature: gene Location: 18628-19764 bp Feature: domain Description: INT_Cre_C Location: 19051-19705 bp Feature: domain Description: INT_Cre_C Location: 19051-19705 bp Feature: gene Location: 19850-21337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20255-20945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 55-2 0945 bp Feature: gene Location: 21362-21832 bp Feature: gene Location: 21854-22105 bp Feature: domain Description: HHA Location: 21902-22085 bp Feature: domain Description: HHA Location: 2 1902 -2 2 085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: SGYG01000003.1 Klebsiella pneumoniae strain KPN638 638_contig_3, whole genome shotgun sequence (116020 bp)
Overview 1 RT 1: 29481-32597 bp Neighborhood of RT #1 [29481, 32597] PRK10276 RVT-GII Feature: gene Location: 29481-29906 bp Feature: domain Description: PRK10276 Location: 29484-29892 bp Feature: domain Description: PRK10276 Location: 29484-29892 bp Feature: gene Location: 30100-30312 bp Feature: gene Location: 30387-31796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30714-31404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0714-3 1404 bp Feature: gene Location: 32030-32260 bp Feature: gene Location: 32319-32597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: SGYG01000004.1 Klebsiella pneumoniae strain KPN638 638_contig_4, whole genome shotgun sequence (80738 bp)
Overview 1 RT 1: 38657-43679 bp Neighborhood of RT #1 [38657, 43687] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 38657-39622 bp Feature: domain Description: ArdC Location: 38783-39617 bp Feature: domain Description: ArdC Location: 38783-39617 bp Feature: gene Location: 39754-40023 bp Feature: gene Location: 40092-41579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40497-41187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 04 97-4 1187 bp Feature: gene Location: 41604-42416 bp Feature: domain Description: PRK10276 Location: 42036-42399 bp Feature: domain Description: PRK10276 Location: 4 2036-4 2399 bp Feature: gene Location: 42416-43687 bp Feature: domain Description: umuC Location: 42419-43679 bp Feature: domain Description: umuC Location: 4 24 19-4 3679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)