myRT

myRT report for GCA_012030375.1_ASM1203037v1

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Seq: JAAUVL010000056.1 Escherichia coli strain ScEc7 Scaffold54, whole genome shotgun sequence (16521 bp)
Overview 1 RT 1: 2372-6372 bp Neighborhood of RT #1 [2372, 6380] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2372-3733 bp Feature: domain Description: DcuC Location: 2375-3707 bp Feature: domain Description: DcuC Location: 2375-3707 bp Feature: gene Location: 3786-4157 bp Feature: gene Location: 4379-4825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685-4787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685-4787 bp Feature: gene Location: 4873-5022 bp Feature: gene Location: 5349-6380 bp Feature: domain Description: Asparaginase_2 Location: 5439-6372 bp Feature: domain Description: Asparaginase_2 Location: 5439-6372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: JAAUVL010000010.1 Escherichia coli strain ScEc7 Scaffold8, whole genome shotgun sequence (166253 bp)
Overview 1 RT 1: 137523-143554 bp Neighborhood of RT #1 [137523, 143554] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 137523-138443 bp Feature: domain Description: AbiEii Location: 137565-138306 bp Feature: domain Description: AbiEii Location: 137565-138306 bp Feature: gene Location: 138430-139233 bp Feature: domain Description: AbiEi_3_N Location: 138463-138724 bp Feature: domain Description: AbiEi_3_N Location: 138463-13872 4 bp Feature: domain Description: AbiEi_3 Location: 138736-139192 bp Feature: domain Description: AbiEi_3 Location: 138736-139192 bp Feature: gene Location: 139528-142737 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140056-140545 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140056-140545 bp Feature: domain Description: nitrilase Location: 142051-142648 bp Feature: domain Description: nitrilase Location: 142 051-142 648 bp Feature: gene Location: 142898-143038 bp Feature: domain Description: Phage_ASH Location: 142925-143018 bp Feature: domain Description: Phage_ASH Location: 142 92 5-143018 bp Feature: gene Location: 143084-143554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: JAAUVL010000090.1 Escherichia coli strain ScEc7 Scaffold88, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)