myRT

myRT report for GCA_012030825.1_ASM1203082v1

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Seq: JAAUVB010000211.1 Pleurocapsa sp. SU_5_0 NODE_4341_length_4038_cov_7.812069, whole genome shotgun sequence (4038 bp)
Overview 1 RT 1: 939-4036 bp Neighborhood of RT #1 [939, 4036] RVT_N RVT-GII GIIM DDE_5 Feature: gene Location: 939-1088 bp Feature: gene Location: 1182-1319 bp Feature: gene Location: 1694-3169 bp Feature: RT Description: RVT_N Location: 1805-2051 bp Feature: RT Description: RVT_N Location: 1 805-2051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2099-2780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2099-2780 bp Feature: domain Description: GIIM Note: maturase Location: 2843-3044 bp Feature: domain Description: GIIM Note: maturase Location: 2843-3044 bp Feature: gene Location: 3588-3806 bp Feature: domain Description: DDE_5 Location: 3594-3744 bp Feature: domain Description: DDE_5 Location: 3594-3744 bp Feature: gene Location: 3890-4036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546)

Seq: JAAUVB010000225.1 Pleurocapsa sp. SU_5_0 NODE_5718_length_3279_cov_8.168782, whole genome shotgun sequence (3279 bp)
Overview 1 RT 1: 231-3278 bp Neighborhood of RT #1 [231, 3278] RVT-GII KOG4768 McrA Feature: gene Location: 231-1904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492-1287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492 -12 87 bp Feature: domain Description: KOG4768 Location: 1431-1890 bp Feature: domain Description: KOG4768 Location: 1431-1890 bp Feature: gene Location: 2467-2877 bp Feature: domain Description: McrA Location: 2581-2848 bp Feature: domain Description: McrA Location: 2 581-2 848 bp Feature: gene Location: 3150-3278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), McrA (COG4058)

Seq: JAAUVB010000227.1 Pleurocapsa sp. SU_5_0 NODE_6156_length_3102_cov_4.317983, whole genome shotgun sequence (3102 bp)
Overview 1 RT 1: 944-2718 bp Neighborhood of RT #1 [944, 2718] RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 944-2098 bp Feature: RT Description: RVT_N Location: 983-1229 bp Feature: RT Description: RVT_N Location: 983 -1229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1280-1706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1280-1706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1706-1874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1706-1874 bp Feature: domain Description: GIIM Note: maturase Location: 1934-2066 bp Feature: domain Description: GIIM Note: maturase Location: 193 4-2066 bp Feature: gene Location: 2572-2718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAUVB010000110.1 Pleurocapsa sp. SU_5_0 NODE_689_length_15145_cov_9.207551, whole genome shotgun sequence (15145 bp)
Overview 1 RT 1: 1-5396 bp Neighborhood of RT #1 [1, 5440] RVT-GII GIIM HNHc RVT-GII RVT_N RVT-GII Acetyltransf_3 CyoE Feature: gene Location: 1-600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112-361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112-361 bp Feature: gene Location: 603-1262 bp Feature: domain Description: GIIM Note: maturase Location: 633-849 bp Feature: domain Description: GIIM Note: maturase Location: 633-84 9 bp Feature: domain Description: HNHc Note: nucleases Location: 1086-1239 bp Feature: domain Description: HNHc Note: nucleases Location: 1086-1239 bp Feature: gene Location: 1328-2263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1610-2246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1610-224 6 bp Feature: gene Location: 2594-2773 bp Feature: gene Location: 2851-3582 bp Feature: RT Description: RVT_N Location: 2887-3133 bp Feature: RT Description: RVT_N Location: 2887-3133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3184-3556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3184 -3556 bp Feature: gene Location: 4163-4372 bp Feature: domain Description: Acetyltransf_3 Location: 4184-4367 bp Feature: domain Description: Acetyltransf_3 Location: 4 184 -4 367 bp Feature: gene Location: 4496-5440 bp Feature: domain Description: CyoE Location: 4520-5396 bp Feature: domain Description: CyoE Location: 4 520-5396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), Acetyltransf_3 (pfam13302), CyoE (COG0109)