myRT

myRT report for GCA_012030835.1_ASM1203083v1

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Seq: JAAUVD010000258.1 Microcoleus sp. SU_5_3 NODE_1225_length_10318_cov_5.725444, whole genome shotgun sequence (10318 bp)
Overview 1 RT 1: 281-7268 bp Neighborhood of RT #1 [281, 7268] InsQ RVT_N RVT-GII RVT-GII RVT-GII HNHc InsQ RVT_N RVT-GII GIIM McrA Feature: gene Location: 281-763 bp Feature: domain Description: InsQ Location: 284-602 bp Feature: domain Description: InsQ Location: 284-602 bp Feature: gene Location: 1207-1629 bp Feature: domain Description: RVT_N Location: 1261-1504 bp Feature: domain Description: RVT_N Location: 1 261 -1 504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1555-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 555-1 61 5 bp Feature: gene Location: 1632-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1644-1875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 644-1 875 bp Feature: gene Location: 1878-2072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884-2022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 884-2022 bp Feature: gene Location: 2573-2938 bp Feature: domain Description: HNHc Note: nucleases Location: 2747-2903 bp Feature: domain Description: HNHc Note: nucleases Location: 2747-2903 bp Feature: gene Location: 2944-3819 bp Feature: domain Description: InsQ Location: 3004-3781 bp Feature: domain Description: InsQ Location: 3004-3781 bp Feature: gene Location: 4419-6047 bp Feature: domain Description: RVT_N Location: 4449-4695 bp Feature: domain Description: RVT_N Location: 4449-4695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4737-5376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4737-5376 bp Feature: domain Description: GIIM Note: maturase Location: 5463-5697 bp Feature: domain Description: GIIM Note: maturase Location: 5463-5697 bp Feature: domain Description: McrA Location: 5778-6036 bp Feature: domain Description: McrA Location: 5778-6036 bp Feature: gene Location: 6737-6952 bp Feature: gene Location: 7134-7268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, HNHc (smart00507), GIIM (pfam08388), McrA (COG4058)

Seq: JAAUVD010000014.1 Microcoleus sp. SU_5_3 NODE_124_length_37640_cov_6.668088, whole genome shotgun sequence (37640 bp)
Overview 1 RT 1: 28601-34079 bp Neighborhood of RT #1 [28601, 34093] InsQ RVT_N RVT-GII McrA MPP_PAPs DUF3891 Feature: gene Location: 28601-29776 bp Feature: domain Description: InsQ Location: 28604-29750 bp Feature: domain Description: InsQ Location: 2 8604-2 9750 bp Feature: gene Location: 30041-30220 bp Feature: gene Location: 30338-31882 bp Feature: domain Description: RVT_N Location: 30347-30578 bp Feature: domain Description: RVT_N Location: 30347-30578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30638-31295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30638-312 95 bp Feature: domain Description: McrA Location: 31526-31853 bp Feature: domain Description: McrA Location: 3152 6-31853 bp Feature: gene Location: 32118-33743 bp Feature: domain Description: MPP_PAPs Location: 32256-33360 bp Feature: domain Description: MPP_PAPs Location: 32 2 56-33360 bp Feature: gene Location: 33869-34093 bp Feature: domain Description: DUF3891 Location: 33872-34079 bp Feature: domain Description: DUF3891 Location: 33872 -34079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, McrA (COG4058), MPP_PAPs (cd00839), DUF3891 (pfam13030)

Seq: JAAUVD010000030.1 Microcoleus sp. SU_5_3 NODE_187_length_32254_cov_6.338220, whole genome shotgun sequence (32254 bp)
Overview 1 RT 1: 19537-24889 bp Neighborhood of RT #1 [19537, 24889] PNPsynthase RVT_N RVT-GII McrA Feature: gene Location: 19537-20259 bp Feature: domain Description: PNPsynthase Location: 19546-20245 bp Feature: domain Description: PNPsynthase Location: 19546-20245 bp Feature: gene Location: 20615-20794 bp Feature: gene Location: 21608-23170 bp Feature: domain Description: RVT_N Location: 21725-21866 bp Feature: domain Description: RVT_N Location: 21725-21866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21926-22583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21926-22583 bp Feature: domain Description: McrA Location: 22814-23138 bp Feature: domain Description: McrA Location: 22814-23 13 8 bp Feature: gene Location: 23567-24313 bp Feature: gene Location: 24392-24889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PNPsynthase (cl00541), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: JAAUVD010000108.1 Microcoleus sp. SU_5_3 NODE_440_length_20239_cov_6.226979, whole genome shotgun sequence (20239 bp)
Overview 1 RT 1: 4440-8634 bp Neighborhood of RT #1 [4440, 8634] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 4440-4706 bp Feature: gene Location: 4951-5088 bp Feature: gene Location: 5637-7490 bp Feature: domain Description: RVT_N Location: 5709-5955 bp Feature: domain Description: RVT_N Location: 5709-5955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5997-6705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5997-6705 bp Feature: domain Description: GIIM Note: maturase Location: 6804-7038 bp Feature: domain Description: GIIM Note: maturase Location: 6804 -7038 bp Feature: domain Description: HNHc Note: nucleases Location: 7239-7386 bp Feature: domain Description: HNHc Note: nucleases Location: 7239-7386 bp Feature: gene Location: 7532-8080 bp Feature: gene Location: 8266-8634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAUVD010000138.1 Microcoleus sp. SU_5_3 NODE_564_length_17294_cov_6.705481, whole genome shotgun sequence (17294 bp)
Overview 1 RT 1: 14386-16983 bp Neighborhood of RT #1 [14386, 17105] HicB TPR RVT-Retrons HicB Feature: gene Location: 14386-14613 bp Feature: domain Description: HicB Location: 14431-14599 bp Feature: domain Description: HicB Location: 14431-145 99 bp Feature: gene Location: 14632-14760 bp Feature: gene Location: 14952-16682 bp Feature: domain Description: TPR Location: 14979-15183 bp Feature: domain Description: TPR Location: 14979-15 183 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15552-16173 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15 5 5 2-16173 bp Feature: gene Location: 16767-17105 bp Feature: domain Description: HicB Location: 16797-16983 bp Feature: domain Description: HicB Location: 16797-16983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), TPR (smart00028), RVT-Retrons

Seq: JAAUVD010000219.1 Microcoleus sp. SU_5_3 NODE_983_length_11794_cov_6.196280, whole genome shotgun sequence (11794 bp)
Overview 1 RT 1: 454-3830 bp Neighborhood of RT #1 [454, 3830] NagC RVT_N RVT-GII GIIM McrA RVT-GII UPF0227 Feature: gene Location: 454-1209 bp Feature: domain Description: NagC Location: 514-961 bp Feature: domain Description: NagC Location: 514-96 1 bp Feature: gene Location: 1194-1406 bp Feature: gene Location: 1469-1960 bp Feature: domain Description: RVT_N Location: 1517-1763 bp Feature: domain Description: RVT_N Location: 1517-176 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1811-1904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1811-1904 bp Feature: gene Location: 1969-2703 bp Feature: domain Description: GIIM Note: maturase Location: 2149-2374 bp Feature: domain Description: GIIM Note: maturase Location: 2149-2374 bp Feature: domain Description: McrA Location: 2458-2680 bp Feature: domain Description: McrA Location: 2458-26 80 bp Feature: gene Location: 2707-2868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2737-2860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2737-286 0 bp Feature: gene Location: 3144-3386 bp Feature: domain Description: UPF0227 Location: 3168-3336 bp Feature: domain Description: UPF0227 Location: 316 8-3336 bp Feature: gene Location: 3582-3830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NagC (COG1940), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), UPF0227 (pfam05728)